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Query: [PET] KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQHIFAFFCTGFLGAVVGANFPNNIQIGGLFPNQQSQEHAAFRFALSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISIIDHYKWQKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIIKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTIPAKIMQQWKNSDARDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDSIRKIGYWNEDDKFVPAATDAQAGGDNSSVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYKSRSESKRMKGFCLIPQQSINEAIRTSTLPRNSGAGASSGGSGENGRVVSHDFPKSMQSIPCMSHSSGMPLGATGLLast
1 -69.900d3hsya_ c.93.1.1 (A:) Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  56  1......................NSIQIGGLFPRGADQEYSAFRVGMVQFSTSFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 374
2 -68.600d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  82  1.....................................................................................................................................................................................................................................................................................................................................................................................................................NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQT---------------------------------------------------------------------------------------------------------------------------EIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGS..................................................................................................................... 261
3 -67.300d3kg2a3 f.14.2.1 (A:508-632,A:774-817) Ionotropic glutamate receptor 2 (GluR2) ligand channel domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  69  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPXGAKDSGSKEKTSALSLSNVAGVFYILVGLGLAMLVALIEFCYK........................................................................................................................................................................................................................ 170
4 -63.300d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  35  2.......................................................................................................................................................................................................................................................................................................................................................................................................................RYTVATRVGKPYFSWREEPEHYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNK---------------------------------------------------------------------------------------------------------------------------VQFGTIRGGATSVYFSESNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQR-NCELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNS........................................................................................................................... 255
5 -63.100d3h6ga_ c.93.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  28  1.....................THVLRFGGIFEYVESAEELAFRFAVNTINRNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKSDNKDSFYVSLYPDLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLP-ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGFMTTDAALMYDAVHVVSVAVQQFPQMT--------VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 383
6 -61.300d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  22  1...................................................................................................................................................................................................................................................................................................................................................................................................................LIGRHLRLGSVEEQPFMFFAT--EGCEGNDCWSGMVNDMVVKLSEDLGFTYEYIQPDDRKFGALNKTTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIK--------------------------------------------------------------------------------------------------------------------------AVVKGEGTTLNQVLELLDQDKYKWGVIGSRHPETLLKTHRDSRYSRLVDEGVE------LKDLNHAIETLR--GGLFVFIDEGPVLAHNLIS-DCDVFSVGEEFQSFEYAFGLPKDSPYKSLIDSHLLKFREEGFIDILWEKWSS............................................................................................................................ 246
7 -58.600d5kc8a_ c.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  1.....................DSIIHIGAIFDESAKKDDEVFRTAVGDLNQNEKITFSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRYTLSVRPPLHDVILRVVTEYAWQKFIIFYDSEYDIRGIQEFLDKVSQQGMDVALQKVENNINKMITTLFDTMRRDTLRRAILVMNPATAKSFITEVVETNLVAFDCHWIIINEEINDVDVQELVRSIGRLTIIRQTFPVPQNISQRCFRGNHRISSDPKDPFAQNMEISNLYIYDTVLLLANAFHKKLEDRKWHSMA--SLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFGENGGNPNVHFEILGTNGRGVRKLGCWNPVTGLNGS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 405
8 -57.400d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  28  1....................................................................................................................................................................................................................................................................................................................................................................................................................GGVVLRVVTVLEEPFVMVSE--NVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQE-DGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYM---------------------------------------------------------------------------------------------------------------------DYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNSENNVLESQAGIQKVKY--GNYAFVWDAAVLEYVAINDPCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNG......................................................................................................................... 261
9 -51.300d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  23  4.........................................................................................................................................................................................................................................................................................................................................................................................KIVTIHQ-EPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTIL--------------------------------------------------------------------------------------------------------------------------VKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHN-----YESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ-KCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV-RYQECDS..................................................................................................................... 289
10 -50.000d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  24  3........................................................................................................................................................................................................................................................................................................................................................................................................................LSIVTLEEAPFVIVEDTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKK--VNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFV---------------------------------------------------------------------------------------------------------------------ETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVS---------LKTGKLDAFIYDAAVLNYKAGRDECKLVTIGSIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL--TGICHA..................................................................................................................... 280
11 -47.800d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  23  1....................................................................................................................................................................................................................................................................................................................................................................................................................NKLHLRVVTLIEHPFVFTREDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAW--KNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTR-----------------------------------------------------------------------------------------------------------------------GTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN--------VPATPDGVQYLKNPEKLDAFIMDKALLDYEVSIDDCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWY-KVVPC....................................................................................................................... 290
12 -40.100d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  19  1.................................................................................................................................................................................................................................................................................................................................................................................................................ARLKGITLRIGVIESPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAP---------PNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRK---------------------------------------------------------------------------------------------------------------------------GTLIDGMDDLKNGK--RIGIRIGTAGEDYYLREISGGSRNFYPL-----------KSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQTK.......................................................................................................................... 243
13 -32.600d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  2..................ALPPQKIEVLVLLPQDDTRVRPAIEYALRSVEGNGQVAYEDSDCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQSHLTRVAPAMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQ-GLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSK-----------------KDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGSVIAMTDVEAGTQEVIGDYFGKEG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 395
14 -31.400d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  24  1.......................................................................................................................................................................................................................................................................................................................................................................................................................PLLVATRVIPPF--------VLSNKGELSGFSIDLWRSIATQIGIESKL-------------EYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGTGD-----------------------------------------------------------------------------------------------------------------------IRSIDDLPGK---VVATTAGSTAATYLREHHISVLE--------------VPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWF............................................................................................................................. 218
15 -30.000d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  15  1........................................................................................................................................................................................................................................................................................................................................................................................................................LKVGVVGNPPFVFYGEG-----KNAAFTGISLDVWRAVAESQKWNSEY-------------RQNSISAGITAVAEGELDILIGPISVTPERAAIITFTQPYFSSGIGLLIPGTATPL-------------------------------------------------------------------------------------------------------------------------FRSVGDLKNK---EVAVVRDTTAVDWANFYQADVRE--------------TNNLTAAITLL-QKKQVEAVMFDRPALIYYTRQNP-NLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWL............................................................................................................................. 220
16 -29.700d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  1......................SDLTVAVVLPLTNARVGPAVELALARVKARPDLLPGWTVRVCSDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGALTTRTGPSLGDFVTALHRRLGWEHQALVLYADRCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRRKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTV-----------------TDGENITQRMWNRSFQGVTGYLKIDRNGDRDDFSLWDMDPETGAFRVVLNYNGTSQ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 399
17 -29.400d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  23  15...........................................................................................................................................................................................................................................................................................................................................................................................................................................EFKQGDKYVGFDLDLWAEIAKGAGWTYKIQ-------------PMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTT--------------------------------------------------------------------------------------------------------------------------IKSIDDLNGK---VIAAKTGTATIDWIKAHLKPKEIRQF------------PNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE.......................................................................................................................... 221
18 -28.100d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  21  22.............................................................................................................................................................................................................................................................................................................................................................................................................................................SADGKLQGIDLELFSSYCQSRHCKLNIT-------------EYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKIT-------------------------------------------------------------------------------------------------------------------------LNNLNELNKY---SIGYPRGMAYSDLIKNDLEP------KGYYSLSKVKLYPTYNETMADL-KNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLW-LKEQGPQKISGIVDSWMK............................................................................................................................ 229
19 -27.800d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  22  1....................................................................................................................................................................................................................................................................................................................................................................................................................RGELRVGLEPGYLPFEMKDKKGN-------VIGFDVDLAREMAKAMGVKLKLV-------------PTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKG-------------------------------------------------------------------------------------------------------------------------VKSYKDL-DKPELTLVTKFGVSAEYAAKR------------LFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPFLNWLNHFLAQIKHDGSYDELYERWFVDT.......................................................................................................................... 227
20 -27.100d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  20  22............................................................................................................................................................................................................................................................................................................................................................................................................................................QNDDKQFTGIDVDLLNAIAKNQGFKLKWNFI-------------GFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDS--------------------------------------------------------------------------------------------------------------------------IKSWKDLKGK---TLGAKNGTASFDYLNAHAKEYGYTVKTF-----------TDATTMYSSLNNGSINALMDDEPVIKYAIKQGQ-KFATPIKPIPDGQYGFAVKKGSELIEMFNNGLANLRANGEYDKIIDKYLESD.......................................................................................................................... 229
21 -26.800d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  22  19...........................................................................................................................................................................................................................................................................................................................................................................................................................................EYMQKGKIVGFDVDLLDAVMKAAGLDYELKNI-------------GWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQ---------------------------------------------------------------------------------------------------------------------------GSPVKNALDLKGK---TIGVQNATTGQEAAEK-----------LFGKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGKE.......................................................................................................................... 227
22 -26.200d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  28.............................................................................................................................................................................................................................................................................................................................................................................................................................................TEEGGYAGFDVDMAQRLAESLGAKLVVVPT-------------SWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAR-------------------------------------------------------------------------------------------------------------------------FQTLEQI-DQPGVTAIVNPGGTNEKFARAN-------------KKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL............................................................................................................................. 232
23 -25.900d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  21  21............................................................................................................................................................................................................................................................................................................................................................................................................................................IDQNGKPAGYNVELTRAIAEVMGMTVEFR-------------LGAWSEMFSALKSGRVDV-LQGISWSEKRARQIDFTPPHTIVYHAIFARRDSPP--------------------------------------------------------------------------------------------------------------------------AAGLEDLRGR---KVALHRDGIMHEYLAERGYGK------------DLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDALLARFSEGLAILRKTGQYEAIRAKWL............................................................................................................................. 223
24 -25.700d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  17  13................................................................................................................................................................................................................................................................................................................................................................................................................................PPFEVWSGN------NSSLYGFDIDLMQEICRRLHATCTFEAY-------------IFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTV---------------------------------------------------------------------------------------------------------------------------DSKISTFDDLHGK---KIGVRKGTPYARQVLSENRNNQVIFY-------------ELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKGEGYSIMANPDQFLIKKINKILLEMEADGTYLRLYSEYF............................................................................................................................. 228
25 -25.600d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  19  29............................................................................................................................................................................................................................................................................................................................................................................................................................................AQKDGSYAGFDIDLATAVFEKYGITVNWQPI-------------DWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKK---------------------------------------------------------------------------------------------------------------------------SSGITTAKDMTGK---TLGAQAGSSGYADFEAN-----PEILKNIVANKEANQYQTFNEALIDL-KNDRIDGLLIDRVYANYYLEAEG-DYNVFTVGLETEAFAVGSRKEDTLVKKINEAFSSLYKDGKFQEISQKWFGED.......................................................................................................................... 242
26 -25.600d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  20  26............................................................................................................................................................................................................................................................................................................................................................................................................................................TTADGNFTGFDIELFLNVAGRLGFKKEQVVF----------TGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTS----------------------------------------------------------------------------------------------------------------------------EAGITDAAGLKGKRGVVQGTLQEIYAEKNFAGTDLVKFPDNNSAVSAL-----------------NNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDLRNALDKGLKEAMQDGTWKKLHEKWFPGT.......................................................................................................................... 232
27 -25.500d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  21  28............................................................................................................................................................................................................................................................................................................................................................................................................................................FDERNQLTGFEVDLGNAIAERLGLKPRWI-------------AQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG----------------------------------------------------------------------------------------------------------------------------PRTAKDLQGK---VVGVQVGTTYMEAAQK------------IPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQERVAMAVAKGNKLLDALNRALAELMQDGTYARISQKWFGED.......................................................................................................................... 232
28 -25.300d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  14  20..........................................................................................................................................................................................................................................................................................................................................................................................................................................EFVDADNKIVGFDIDVANAVCKEMQAECSFT-------------NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTR---------------------------------------------------------------------------------------------------------------------------KGAYHTFADLKGKKGLENGTTHQRYLQDKQQAITPVAYDSYLNAFTDL-----------------KNNRLEGVFGDVAAIGKWLKNNPMDERASDPDYYGKGLGIAVRKDNDLLQEINAALDKVKASPEYAQMQEKWFT............................................................................................................................ 228
29 -25.300d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  21  7....................................................................................................................................................................................................................................................................................................................................................................................................................KGKLVVALNPDFAPFEYQ----KVVDGKNQIVGSDIELAKAIATELGVELELS-------------PMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLAT-------------------------------------------------------------------------------------------------------------------------YQSVNDLAQKKGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDL-----------------KSGQVDAVIFEEPVAKGFVENNP--ADLNFEKEQDDSYAVAMKKDSKLKEAVDKTIQKLKESGELDKLIEDAFKAS.......................................................................................................................... 235
30 -24.800d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  17  16..........................................................................................................................................................................................................................................................................................................................................................................................................................................NFKDAGGKLIGFDIDLGNDLCKRMNIECKFV-------------EQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKT---------------------------------------------------------------------------------------------------QVAIENLPLDNITPEQKAELDKFTKIFEGVKGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDL-----------------KAGRIDASLASVSFLKPLTDKPD-DLKMFGPRMTGKGVGVGIRKEDALKALFDKAIDAAIADGTVQKLSQQWFGYD.......................................................................................................................... 251
31 -24.800d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  15  15..........................................................................................................................................................................................................................................................................................................................................................................................................................................EFVDKRGEVVGFDIDLAREISNKLGKTLDVR-------------EFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGEN--------------------------------------------------------------------------------------------------------------------------KHPLPLTQYR---SVAVQTGTYQEAYLQSLSEVHIRSF-------------DSTLEVLMEV-MHGKSPVAVLEPSIAQVVLKDFPTATIDLPEDQWVLGYGIGVASDRPLALKIEAAVQEIRKEGVLAELEQKWGLNN.......................................................................................................................... 224
32 -24.600d5x2mb_ c.93.1.0 (B:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  13  18........................IKLGGLFPIKEQSNELVMKYAVEEINANSQLLPGVKL-TCRHSAVIVRPALSFLTEKMVAVIGPQSSEMVTVIGKLLGFFLMPQISFGATSDKFSPSFFRTVPSQVDAMVQLIKKFNWNWVAVVGEEEYGQQGVQQFSKKAEDMGVCVAYQGLIPIYDDPIQTIINNIQTTEVKVVVVFSLVSPAVSFFEEVIKKNLTG---VWIASSAISDKVYSLPNIDSIGTVIGFIDETETLELLSPFTEVLWSLSPANVSLVKEESVQRTAFSVYAAVYTVAHALHKLLECNSAACKWSSSTRLY---------PWKLLEVLKEFSVNISNTSLKFDQNGNPNI-GYSVIQRINQSLSSVGSYRSANLSINETLFKWYTNNSEKPE..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 470
33 -24.500d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  23  25............................................................................................................................................................................................................................................................................................................................................................................................................................................VDENGNIVGFDVDLAKEIARRLGVELKIVDM-------------TFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFR-------------------------------------------------------------------------------------------------------------------------PKTYEDLVGK---TVAVQIGTTGDIEVSKYDGIKVVRF-------------DKFTDAFLEL-KRGRADAVVLDSATARAFVAKNP-DLVISSGVLSSEQYGIAVRKEDTLLEFINSVLRELKK-SPYDVLIEKWF............................................................................................................................. 225
34 -24.400d5x2ma_ c.93.1.0 (A:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  14  10........................YLIGGLFNIHYVAAAQMMRFSVEEINNSSSLLPNVQMFDHCSDIHSFPGIFKLLSVNAIGVVGPFTSTHALSIAPIFMTNLFPMVSYGCSGSVFSPSFLRTVHSVINAIVGIILNFNWRWVAFLYDDDFGKDGLEQFKNKIEDSEICLAFYKAI-NVNTDYLQVFKQIEEQNIKVIVVFAPKVYAEAVVESAVQLNVTNK--VWIADDSLNKKLPSMNGIQNIGTVLGVAQPVVTIPGFTDFIYSAISQTDGGDTKSLLNADPSFSFPVYAAVYAIAHALHNTLRCGSDRCPKNIT------------HPHMILEELKKSNFTLLNQTVQFDENGDPKFGSLSVVFWNSSNAEEVGSYHFQSS....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 429
35 -24.200d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  9....................................................................................................................................................................................................................................................................................................................................................................................................................KGKIVVATSGTLYPTSYHDTD----SGSDKLTGYEVEVVREAAKRLGLKVEFKEM-------------GIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSG-------------------------------------------------------------------------------------------------------------------------IKTLKDLKGK---KAAGAATTVYMEVARKY-------------GAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIDIKYMPNKQALVMKKSNALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSKKIDADVQD.............................................................................................................. 249
36 -24.200d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  22  16............................................................................................................................................................................................................................................................................................................................................................................................................................................INDAGEVDGFERELGDELCKRAGLTCEWV-------------KNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVAT-------------------------------------------------------------------------------------------------------------------------------SDGADLSG----IVAAQTATIQAGYIAESGATLVE--------------FATPEETIAAV-RNGEADAVFADRDYLVPIVAESGGELMFVGDVPLGGGVGMGLRESDGLRGKFDAAITSMKEDGTLNTMIKKWFGED.......................................................................................................................... 214
37 -24.100d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  16  2............................................................................................................................................................................................................................................................................................................................................................................................................ENKLEELKEQGFARIAIANEPPFTAVGADGK-------VSGAAPDVAREIFKRLGVA------------DVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG-------------------------------------------------------------------------------------------------------------------------LKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVI-----------VVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPCDGAAFRKGDELRDAFDVELAKLKESGEFAKIIEPYGFSAKAAMSTTREKLCAAK........................................................................................................... 256
38 -23.900d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  17  1............................................................................................................................................................................................................................................................................................................................................................................................................ESKLDQILSSGELKVGTTGDDPMAMKDPA------TNKYKGFDIDVMQELAKDMGVKITFV-------------PTEWKTIVSGITAGRYDISTS-VTKTPKRAEVAGFTDSYYKYGTVPLVLKKNLKK-------------------------------------------------------------------------------------------------------------------------YSTWKSL-NNKDVTIATTLGTSQEEKAKEF-------------PLSKLQSVESPARDFQEV-LAGRADGNITSSTEANKLVVKYPQLAIVPDGEKNPAFLAMMVSKNDQWNDYVNEWIKSKKSSGFFNKLLAKYNLKS.......................................................................................................................... 235
39 -23.800d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  23  29.............................................................................................................................................................................................................................................................................................................................................................................................................................................IESRTVQGFDVDIAKAITKKINGKTEFVEV-------------TSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKK---------------------------------------------------------------------------------------------------------------------------GSQIKSVDDLNASTTV--LAVKGSTSAANIRQH------------APDAKILELENYAEAFTAL-QSGQGDAMTTDNAILLGIADENP-EYELVGGTFTNEPYGIAINKGQEFLKAVNQALEEMHADGTYDKIYQKWFPNE.......................................................................................................................... 235
40 -23.700d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  14  18..........................................................................................................................................................................................................................................................................................................................................................................................................................................SSKDAKGEFIGFDIDLGNEMCKRMQVKCTWV-------------ASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI--------------------------------------------------------------------------------------------------------------------------QPTLESLKGK---HVGVLQGSTQEAYANDNWRTKGVDVVAY-----------ANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGPSVKDKKYFGDGTGVGLRKDDTLKAAFDKALTELRQDGTYDKMAKKYFDFN.......................................................................................................................... 234
41 -23.700d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  17  18............................................................................................................................................................................................................................................................................................................................................................................................................................................LDENGKLTGYDVELVKEIDKRLGYKFKFKTM-------------DFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNS-------------------------------------------------------------------------------------------------------------------------INSTKDLAGK---RVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTG--------RADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETLSKKVDEALQSIIDDGTLKKLSEKWLGAD.......................................................................................................................... 230
42 -23.200d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  19  27............................................................................................................................................................................................................................................................................................................................................................................................................................................VDEKGNNQGYDIALAKRIAKELENKVQFVLV-------------EAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPK---------------------------------------------------------------------------------------------------------------------------DSNITSVEDLKDK---TLLLNKGTTADAYFTQN------------YPNIKTLKYDQNTETFAAL-MDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKLKEFIDNLIIKLGQEQFFHKAYDETLKA........................................................................................................................... 233
43 -22.700d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  18  30............................................................................................................................................................................................................................................................................................................................................................................................................................................HDKDGKLTGYDVEVTRAVAEKLGVKVEFKET-------------QWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHN---------------------------------------------------------------------------------------------------------------------------DSNIKSIADIKGV---KTAQSLTSNYGEKAKAAGAQLVP--------------VDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPEKVGSGLIVNKGNDAVAKFSTAINELKADGTLKKLGEQFFGKD.......................................................................................................................... 236
44 -22.500d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  10........................VIIGALFSVHHQPPAEAMFHTLDKINADPVLLPNITL-SCWHSSVALEQSIEFIRKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSKYFLRVVPSQARAMLDIVKRYNWTYVSAVHEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNEKSFDRLLRKLRLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPID-------GRKLLDFLIKSSFVGVSGEVWFDEKGDAPG-RYDIMNLQYTEYVHVGTWHEGV........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 469
45 -22.000d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  16  15...........................................................................................................................................................................................................................................................................................................................................................................................................................................SYEKKGKLTGYDIEVAKEVFKASD-KYDVKYQK------------EWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSD---------------------------------------------------------------------------------------------------------------------------IKSYNDIAGH---STQVVQGNTTVPMLQKFNKNHENNQVKLNFTS------EDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLPSQKPYVYFIFAQDQKLQKFVNKRLKKLYENGTLEKLSKKYLGGS.......................................................................................................................... 229
46 -20.900d4nqra_ c.93.1.0 (A:) automated matches {Anabaena variabilis [TaxId: 240292]}  ali model 3D-neighbors follow..  12  1......................NTIPIGIALAQTSNVAVAGAKIAEKYFNDKTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKEIGDYVARVSAPPNSVKAALKQNPNIKKVAVFFAQNDSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGA----IIGGDGLNTSNVFAVCKALCDIAQAYSPEYTGEINKAFRQAYVDQYKK--------EPPQFSAQAFAAVQVYVESLKALDTKNKVSKIQLPELR------------TELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKMEKDGSQGKFT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 361
47 -20.400d3huta1 c.93.1.0 (A:40-384) automated matches {Rhodospirillum rubrum [TaxId: 269796]}  ali model 3D-neighbors follow..  11  1.......................ALLLGYELPLTGANAQEAARLQLDRFNAARPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDISPWQFRAITTEGPNNAAWMIGDGFTSVAVIGVTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP----VYGSSALYSPKFIDLGGPAVELATAFVLGASDPVVVEFVSAYETLY--------GAIPTLFAAHGYDAVGIMLAAVGRAGPE---------------------VTRESLRDALAATDYAGVTGITRFDPETRETTKILTRLVVREGDFRVI............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 345
48 -20.400d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  19  28.............................................................................................................................................................................................................................................................................................................................................................................................................................................QATGEIKGFEVDVAKLLAKSIDKKIKLVAV-------------NAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLK---------------------------------------------------------------------------------------------------------------------------EKKYKSLADMKGA---NIGVAQAATTKKAIGEAAKKIGIDV--------KFSEFPDYPSIKAAL-DAKRVDAFSVDKSILLGYVDD---KSEILPDSFEPQSYGIVTKKDDPFAKYVDDFVKEH--KNEIDALAKKWG............................................................................................................................. 230
49 -20.400d1z15a_ c.93.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  12  1......................EDIKVAVVGAMSGPVAFTGAEQAVADINAKGGILQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTA-TTGLDSDQGPTAAKYIEKVKPQRIAIVHDQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ----FMGPEGVANVSLSNIAGESAELVTKPKNYDQVPANKPIVDAIKAKKQD--------PSGAFVWTTYAALQSLQAGLNQSDDPA------------------------EIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTATD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 342
50 -20.200d4q6ba_ c.93.1.0 (A:) automated matches {Desulfitobacterium hafniense [TaxId: 272564]}  ali model 3D-neighbors follow..  13  1......................EEIFIGVAFASLDDLFAEGLELAVQEINEQRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVMLSPASTSPDLTIHVFRNIPSIARQLAIYLAEQGHERMVIYYTDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGMDGIFI-TATGGGTEFLVDAKSVGIEVP----LIAGNSWDALSLTEDIENIGMVGSFFNPQRPDSRTQDFVEAFRREY--------GQPPTSYAAAGYDAVILLAEALEKSDLTHP----------------------ATLAQGLRDLGWEGVMGMHRFDGRGDDIGDLVVLKKMKDGRFEYL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 346
51 -19.900d3ipca1 c.93.1.0 (A:2-348) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  12  1.......................DVVIAVGAPLTGPNAQKGAEQAAKDINAAGGIIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTEFRTCGRDDQQGGIAGLADHFKDAKVAIIHDTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK----LVSGDGIVSNELASIAGDAVELNTFGPDPTLRPENKELVEKFKAAGF---------NPEAYTLYSYAAMQAIAGAAKAAGSVE----------------------PEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKK..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 336
52 -18.200d3snra_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316057]}  ali model 3D-neighbors follow..  10  2.....................TNEITVGISVTTTGPAARNALEFVVKEISHPIKIIVLDDGGDPTAATTNARRFVT--ESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPPERAKWSVVMPQPMGKVLYEHMKKNNVKTVGYIGYSDSGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL----IYQTHGAASMDFIRIAGKSAEGVLMAS-ALTKKPGMALVKVYEEKY-------GPSSRSQFAGHSYDAFKVLERVVPVALKK---------------AKPGTQEFREALREAFLTEKIAASQGVYNFTETDRYDDRSRILLTVKNGKYVIV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 358
53 -17.600d3sg0a_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  9  1.....................QAEIKIGITMSASGPGASKTVAALPKEIGGE-KVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAIERRKWVYKVVPNMAEAIGKYIAKTGAKKVGYIGFSDAGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA----IYQTHGVATEEFIKLGGKDVEAEDMPADSPFRKVKARFVDAYKAAN-------GGAAPTIFGVHLWDSMTLVENAIPAALKA---------------AKPGTPEFRAAIRDQIEKSKLALNNGLSNMTPDNHNDERSAFLIEIRDGAFR................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 359
54 -17.300d4gnra_ c.93.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  14  1......................KTIKIGFNFEESGSLAQKGAQLAVDEINAAGGIIEVVDKDNKSETAEAASVTTNLVTQKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTDYLFIGTSFQGKIISNYVEKLNAKKVVLYTDNASDYA--KGIAKSFRESKGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP-----FNGEEFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--------NEEPSTFAALAYDSVHLVANAAKGAKNSG------------------------EIKDNLAKTKFEGVTGQTSFDADHNTVK-TAYMMTMNNGKVEAAEVVKP.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 348
55 -16.900d3td9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  1.......................VVKIAVILPMTGGISWEGIQIAHEEKPEEVELVLLDTRSEKTEAANAAARAID--KEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTKFVSRV-PFQGAAMAVFAKNLGAKRVVVFTDQDYSVGLSNFFINKFTELGGQV-KRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGY----ILAGDGADAPELIEIGGEAVETTHYHPKAASNPVAKKFVEVYKEKY--------GKEPAALNALGYDAYMVLLDAIERAGSFD----------------------REKIAEEIRKTRFNGASGIINIDENGDAIK-SVVVNIVKNGSVDFEAVINPDD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 349
56 -15.400d1peaa_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  10  3..........................IGLLFSETERSQRYGALLAVEQLNRERPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIPAPNQNSAPLAAYLIRHYGERVVFIGSDIYPRESNHVMRHLYRQHGGTVLEEIYIPPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGR----PIASLTTSEAEVAKMEDVAEGQVVVAPYFSDTPASRAFVQACHGFFP------ENATITAWAEAAYWQTLLLGRAAQAAGNWRV----------------------EDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 346
57 -15.300d3n0xa_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  9  1.......................DLKIALIYGKTAKQTETGLMMGLEYATKGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQ-NRYIFRTGRNDAISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDIWVIWAGGGDPLTKLQDMDPKRY---GIELSTGGNILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--------NAPPDFFTAGGFSAAMAVVTAVQKAKSTD----------------------TEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDP................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 345
58 -14.100d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  17  32............................................................................................................................................................................................................................................................................................................................................................................................................................................FRTDEQFGGISAAVLQLLQLRTGLDFEII------------GVDTVEELIAKLRSGEADM-AGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDA--------------------------------------------------------------------------------------------------------------------------PVDADHLDGR---TVALVRNSAAIPLLQRR-------------PQAKVVTADNPSEAMLMV-ANGQADAVVQTQISASYYVNRYFAGKLRIASALDPAEIALATTRGQTLMSILNKALYSISND-ELASIISRW.............................................................................................................................. 234
59 -13.800d2h4aa1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  10  2.........................QIGLLLPLSGDGQITTIQSGFNDAKGNSTIPVQVFDTSMNSVQDIIAQA---KQAGIKTLVGPLLKQNLDVILAPAQIQGMDVLALNATPNSRAICYYGLSPDEAESAANKMWNDGVRNPLVAMQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTA--LYAVASPTELAEMKGYLTNIVPN------IYASSRASASATNTNTDFIAQMNGVQFKDTNSPQYQKLAKSTGGEYQLMR-----------YAMGADAWLLINQFNE--------------------------------LRQVPGYRLSGLTGILSADTNCNVER-DMTWYQYQDGAIVPV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 317
60 -10.100d2ih3c_ f.14.1.1 (C:) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}  ali model 3D-neighbors follow..  21  9..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATVLLVIVLLAGSYLAVLAERGAPG------------------AQLITYPRALWWACETATTVAGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV........................................................................................................................................................................................................................................................................... 92
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.