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Query: [I] KOG1176 Acyl-CoA synthetase, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MANSQRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKESLDITTFISSQTYRGKTAFIDAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIAEPFEQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNEEEIITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEALLLNHPDILDAAVIPLast
1 -115.000d5bsra_ e.23.1.0 (A:) automated matches {Tobacco (Nicotiana tabacum) [TaxId: 4097]}  ali model 3D-neighbors follow..  33  1....................DIIFRSKLPDIYIPNHLPLHSYCFENISEFSSRPCLINGANKQIYTYADVELNSRKVAAGL-HKQGIQPKDTIMILLPNSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIIVTQACHVNKVKDYAFENDVKIICI----DSAPEGCLHFSVLTQANEH-DIPEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGLYIHSEDVMLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVSFLELIQRYKVTIGPFVPPIVLAIAKSPM--VDDYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCLAEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQSGEICIRGDQIMKGYLNDPEATIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVV. 460
2 -106.000d2d1sa_ e.23.1.1 (A:) Luciferase {Luciola cruciata [TaxId: 7051]}  ali model 3D-neighbors follow..  29  1...................DENIVVGPKPFYPIEE-GSAGTQLRKYMERYAKLGAFTNAVTGVDYSYAEYLEKSCCLGKAL-QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIQVSPGTAVLTVVPFHHGFGMFTTLG-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE--LLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP--EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA. 466
3 -100.000d5upta1 e.23.1.0 (A:2-513) automated matches {Streptomyces platensis [TaxId: 684832]}  ali model 3D-neighbors follow..  21  2...................................HTTIGDVLREHRRSHPGRTALVDG--PVRLTWPELDDRVNRLAGSLAA-SGIGRGDRIMWLGQNSFRVYELIAAAGKLGAMVCVGYWRWAPPEMEFALRDFDPHLVVWQHQEIETVARTREALGSDDTARWLRHDSAPQDPDGYEAFLAAGGLADP-DLDIDPDSPVLVLYTAAMSGRQCGSLLSHTNLIAMATAAAWLGDIDHTTAFLNSGPMFHIGNHQFWGMPTLLMAGKNVIVRRVVAEEVRDLLVAEECTHAFLMPPTVAEIVRLNR--DTGHDLSRLRATVAPHLWEGMATTDTSRFTRSGAAAGRGYGQTELSGFAVTAAYGG--PAAGNAGRPGPGLTVRVLD-TAGRECAVGEAGEICARGTVVHRGYWNRDEVNAHRSGWWHTTDLGRREPDGSLTFLGTTTRMLKSAAENIFPAEVENCIEQHPAVREAAVI. 438
4 -98.500d3r44a1 e.23.1.0 (A:1-502) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  25  3.....................................NIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW------IGADSLAERLRSAAADEP-AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI-FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI. 430
5 -97.400d2v7ba_ e.23.1.0 (A:) automated matches {Burkholderia xenovorans [TaxId: 266265]}  ali model 3D-neighbors follow..  23  3.....................................NFAAYLFRLNETRAGKTAYIDD--TGSTTYGELEERARRFASAL-RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPREPRLAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMARPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN--LPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRALGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVV. 439
6 -94.800d4isba_ e.23.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  20  6....................................STVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRA-QSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDA------ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQNWVTWVVGETTYSPLPATHIGGLWWILTCLM--HGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELK--SANATVPSLRLVGYGGSRAIAADVRFIEAT--GVRTAQVYGLSETGCTALCLPTDDGSIEAGAVGRPYPGVDVYLAATDAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACY. 448
7 -94.200d3c5ea_ e.23.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  6...............................EVPAKFNFASADMEKAGKRPPSPALWGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLV-SEKSCDGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKTMK--IKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIFSGYVDNPDKTAARGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVI. 461
8 -93.900d3cw9a_ e.23.1.1 (A:) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. AL3007 [TaxId: 206162]}  ali model 3D-neighbors follow..  21  2....................................QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGE----------PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQP-----KTGTEMAPGFFSEVRIVRIGGGEIVANGEEGELIVAASDAFVGYLNQPQATAEQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVI. 433
9 -93.000d5x8fa_ e.23.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  27  2....................................TEQPNWLMQRAQLTPERIALIYE--DQTVTFAELFAASKRMAEQLAA-HSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQTI------------------DVDELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALF-KSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTMLASLLEETN-----RCPESIRCILLGGGPAPLPLLEECREK--GFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIER--DGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVS. 414
10 -90.600d3ipla1 e.23.1.0 (A:2-477) automated matches {Staphylococcus aureus [TaxId: 158879]}  ali model 3D-neighbors follow..  22  1.......................................DFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRL----KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLL-RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGL-----HEPYNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNK------EGHGELMIKGANVMNGYLYPTDLTTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCV. 426
11 -89.100d4futa_ e.23.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 258594]}  ali model 3D-neighbors follow..  28  8..........................................RLFDKLDDPHKLAIET-AAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTD-------AAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--PYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVI. 430
12 -88.100d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  25  2...........................FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGHRTTYAEVYQRARRLMGGL-RALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVM-DEKAPEGYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLALVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKKALGEVQLKGPWITGGYYGNEEATRSADGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV. 459
13 -87.500d3ivra1 e.23.1.0 (A:4-398) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  22  2..................................HDFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAI--GDGSGPFAPFKDLASDTPF---SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML-TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDTPETIER---FEATCPNATFWATFGQSETSGLSTFAPYRD---RPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHRNGWHHTGDMGRFDADGYLFYAGRA................................. 395
14 -87.300d3o83a_ e.23.1.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 557601]}  ali model 3D-neighbors follow..  19  24..................................IDQPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHNQFIDSLHDVNLSPEIILMLNHQATDFGLL---DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA--QYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNFDEDNYYYSGDLVQRTPDGNLRVVGRIK................................ 435
15 -87.100d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  22  23..................................AGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHT-------EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLD-DPEEIIVNTQGKPMPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMV. 461
16 -65.900d5jjqa_ e.23.1.0 (A:) automated matches {Streptomyces sp. [TaxId: 1265536]}  ali model 3D-neighbors follow..  20  4..................................PVERLHEFLLTGARLTPEKPAVLSGTEPGYVSYRQLANRAESYAAALGG-LGLDIGDRVVLESDTSASAIAALLACSSLGLPFVPVTPETPAKRLLAVVDTVSPALYLQAEGGRREGLPESVGTGRFGPGGLVIE--------------RAPRPGRGFRREVAPADPAYMVFTSGSTGRPKGVVMSHRAILSFYRGMLSQGIVGPESRVASTAPFQFDFSLL--IGLALGSGATVVPVPR-WPRRFVRFLRDSEATQVNGAPSIWRGALRHEADELAAL-GGRIRGVLFSGEPFPLPEVRALQQALPLARIVNCFGSTESVAASFTDVPRPVPDGLTKIGHAHPGAEMMLLDDDGVPVTEPGVTGHIHLRSGSLFTGYWGDPEATARAQTVFRTGDLAHRDATGELYFDGRADNQVKIRGNRVELTEVERRVAEFTGVAAASAV. 448
17 -63.400d3vnqa_ e.23.1.0 (A:) automated matches {Streptomyces sp. [TaxId: 1931]}  ali model 3D-neighbors follow..  24  2.............................SDPIARNSDLVSLFREVAATAPERTALSAE--DDRISYGRLDAWSDAVARTLLAE-GVRPGDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRVVRTAAVA-------------------ECKDAEPGPVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL----LFHSLSFDFSIWGAFSTGAELVVLPH-TPEQYLAVIIDRGVTVINQTPTAFLALTEAAVR--GGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGRPRLVNGYGITETTVFTTFEEITEAYLAQDAIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVT. 443
18 -62.900d3fcea_ e.23.1.0 (A:) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  19  1....................................MKLLEQIEKWAAETPDQTAFV--WRDAKITYKQLKEDSDALAHWISSE-YPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLK----------------DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM--IYPSLVTGGTLWAIDK-RPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVP 431
19 -61.600d5gxda_ e.23.1.0 (A:) automated matches {Dinoroseobacter shibae [TaxId: 398580]}  ali model 3D-neighbors follow..  23  63...............................................AGNGDRVAIIVTHTKQEITYAELQERVSLLAGAL-RAKGIEKGDRVLIYMPMVPQALEAMLACARLGAIHSVVFGGFAANELAVRIDDATPKAIIAASHYKPLLDGAIDLATHKPDFCLIFQREQEPGRDFDWHEAQYGVD-PAECVPVAGNHPAYILYTSGTTGQPKGVLRPTAGLVALNWTMKNIYNVDPGDVFWAASDVGWVVGHSYICYAPLIHGNTTIVFETPDAGTFWRVISEHKVKSFFTAPTALRAVKREDPEFIGKYDLSHLKTVYLAGERADPDTIQWTMDKL-GVPVIDHWWQTETGWAIAANPMGIEHLKIGSPSVAMPGYDVQVLD-EGGHPVAPGTLGAIAVKLPGTLPNLWQAEERFVKSPGYYETGDAGYIDEDGYLYIMARTDDVINVAGHRLSTGAMEEVLASHPDVAECAVI. 525
20 -60.800d4dg8a_ e.23.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}  ali model 3D-neighbors follow..  17  4.............................LLDLYAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA----------------------NGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGIT-RLCLGQSFLAFAPQMRFLVNSPL----AATLEIWGALLNGGCCVLNDLLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDC-----LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALL. 434
21 -58.500d3iteb_ e.23.1.0 (B:) automated matches {Neotyphodium lolii [TaxId: 73839]}  ali model 3D-neighbors follow..  16  2..................................STVPPSHYIETWAKTHPEWKAVEQKIVTEDWTYKKLNETANQVANLIIHA----HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIEN--------------STQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLLELGGVGKFLCLASRAFDVHIG--MFLAWRFGLCAVTGER--LDDLPRTFRELGVTHAGIVPSLLDQTGLVPE------DAPHLVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGNGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVT. 442
22 -58.500d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}  ali model 3D-neighbors follow..  18  1..............GTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIV--CENEQLTYHELNVKANQLARIF-IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQV----------------EIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW--MFMALLTGASLYIILK-DFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVS. 445
23 -56.700d1nnma_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  23  76........................................NCLDRHLQENGDRTAIIDTSQSKHISYRELHRDVCRFANTL-LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADPLKKNVDDALKNPNVTSVEHVIVLKRTGSDILWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE--TPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDPGQARTLFGDHERFEQTKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV. 544

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.