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Query: [S] KOG2889 Predicted PRP38-like splicing factor, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MANRTEKAAKTVKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGIYAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYLEPLYNDFRKLRYMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQKRWALEEVDMLPSYKSLLDGDLVAMSDSDSEEEEVTKKEKPRLTSRRRSRSRDRERDVGDRREVREREKLKERRERGDDEPGPSSSGSGRRDDRDDRRRDRDRSRDRDRRDRRDDDRRDKKKESRRGGADNDEEREIAEANALRAKLGLAPLERLast
1 -74.400d4rz9a_ a.118.30.1 (A:) Pre-mRNA splicing factor Prp38A {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  65  1MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEP............................................................................................................................................. 179
2 -65.100d5f5ta_ a.118.30.1 (A:) Pre-mRNA splicing factor Prp38A {Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId: 759272]}  ali model 3D-neighbors follow..  38  12LDERGSSGPLAPNGLNPATIMEKAVRERIVESYFWKEQCFGVNEADIVDRVVEVRFVGGVTGVTQKPSPFLCLAFKLLQLAPGDDILKEYLYGEKFKYLRALAAFYIRLTRPDKEVYTLLEPFLEDRRKLRRKGKNG-TSLTYMDEFIDDLLTKDRVCSTSLWKMRRRDILEDLDLLEPRVSPLGSLEDILEEEEQAAKNED...................................................................................................................... 215
3 -7.740d3cx5c1 f.32.1.0 (C:262-385) automated matches {Saccharomyces cerevisiae [TaxId: 764097]}  ali model 3D-neighbors follow..  10  3.......................VTPASIVPEWYLRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKVLSKFFFIFVFNFVLLGQICHVEVPYVQIATFIYFAYFLIIVPVISTIENVLFYIGRVN............................................................................................................................................................................................. 123
4 -7.660d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  1.................AWLLMAFTALALELTALWFQHVMLL-----------------------KPCV-LCIYERVALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDSAER............................................................................................................................................................... 120
5 -7.300d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Methanothermobacter thermautotrophicus [TaxId: 145262]}  ali model 3D-neighbors follow..  12  3.................TRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVG----GDYSPSTYFTVTLIVLGIGTFAVAVERLLE.................................................................................................................................................................................................................................... 78
6 -6.870d2wdqd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  9................................................................VRATAIVLTLYIIYMVELTYEVWIGFFASAFTKVFTLL-ALFSILIHAWIGMWQVLTDYVKPL................................................................................................................................................................................................. 77
7 -6.530d3rlff2 f.58.1.1 (F:261-503) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  103..............SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMD----GAGPFQNFFKITLPLLIKPLTPLMIASFAFN-----FNNFVLIQLLTNGGPDRL............................................................................................................................................................................................................ 195
8 -6.370d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  2..............TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWF------------------SIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAP...................................................................................................................................................................................................... 91
9 -6.360d3emla1 f.13.1.4 (A:3-208,A:222-310) Adenosine A2A receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  16........VLAILGN--VLVCWAVWLNSNLQNVFVVSLAAADIAVGVLAIPFAITISTGFCAAC-----HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGII........................................................................................................................................................................................................ 123
10 -6.290d1c17m_ f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  6  50SADVNVTLSMAL----GVFILILFYSIKMKGIGGFTKELTLQPFNHFIPVNLILEGVSLL-------SKPVSLGLRLFGNMYAGELIFILIAG--SQWILNVPWAIFHILIITLQAFIFM........................................................................................................................................................................................................ 163
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.