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Query: [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNSHLFLKSGFPRAPLQNGLGRYVCQLQRITLKFCKNNGSSRGMRDFIENHLLDFAKENPGIVVYVKPRRHRTPVLVGEYLNGEREWMSCRNSTQEEISKWIDLLKTQNGSSSSLRLRKMWHTEVPSIQGPWTPFLLRSPDAQGQAYPSAEASKPLDTPQTATEKLIELFRQQQLEAGEEAHDVLNKKRAELast
1 -39.800d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  1..........................GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVLSGKA................................................................................. 85
2 -7.970d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  18  12..........................GLARGRVETCGGCQLNREVKAFVTEDIQLYHN------LVMKHLPGADPELVLLSRNYQEERIPLSQMTRDEINALVQE....................................................................................... 87
3 -7.250d4r9fa_ c.94.1.0 (A:) automated matches {Caldanaerobius polysaccharolyticus [TaxId: 44256]}  ali model 3D-neighbors follow..  9  1............................KQVVLTLWYPWAGPDG--DAVVSLAKEYSKTHPNVQIKAQTQGGGQGKFLSAVAAGNPPDL-LPGLADQGAIIPLDDYLKDVDTSKFFEAAYNAMKYKGKIYGL--PEMVNVRVLFWNKDLFKQAGLDPNTPPKTIAELDQMAAKLTKTKNGT........... 165
4 -6.930d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  17  29............................................IQAFIQSGRP---AKFPNLQI--KYVRGLDPVVKLLDASGKVETLSITKWNTDTVEEFFET....................................................................................... 85
5 -6.500d2vsna2 c.87.1.12 (A:193-568) O-GlcNAc transferase, OGT {Xanthomonas campestris [TaxId: 314565]}  ali model 3D-neighbors follow..  11  12............................GPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHLFDLAGWGGGGRPEVFALRPAP-VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRL...................... 157
6 -6.420d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  8  7.............................KVVIWHAMQPNELEVFQSLAE----EYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDL-IGKFAEAGLLEPIDEYVTEDLLNEFAPMAQDAMQYKGHYYAL--PFAAETVAI---------NKEMVSEPPKTFDEMKAIMEKYYDPANEKYG......... 153
7 -6.070d4r6ha_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  10  4............................AKKTLTI--STMSTDSERDTFRKLAAAFEKEHSDIHVSLHFPGNDENMMRVRMAANDL---DLFDTHGWGKIRYGEYTADLRDMKWTQDLDPNLNSILKNKSGKVYAYPINQAKDGLA-YNRNILDRYGIAPPETMDDFIKALRTIKEKSKG............ 152
8 -5.990d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]}  ali model 3D-neighbors follow..  15  225..............................VALHGCLQSYSSIGSRFIQNTGYNKWADTNNMIILYPQAIPDYNPN----VGWYGSNADQIGGVQMAAIVGQVKQIVSG................................................................................... 316
9 -5.900d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  12............................RLLDLVFLLDGSSRLSLKAFVVDMMERLRVSQKWVRVAV-----------VEYHDGSHAYIGLKDKRPSELRRIASQVKYAGSQVAST............................................................................ 95
10 -5.720d2qsja1 c.23.1.0 (A:2-131) automated matches {Silicibacter pomeroyi [TaxId: 246200]}  ali model 3D-neighbors follow..  9  52...........................LLDVNL------PDAEAI-----DGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFI-PKSADPQVLIHAVSLILEGE.................................................................................. 122
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;