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Query: [DL] KOG3999 Checkpoint 9-1-1 complex, HUS1 component, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFKTRISNLYTLTRLVQALDKIGRFCWLRLMPETVNFVIVPDFRMTQVWSVLEVETIFEDYVVQSNADNVINLEVPIDNFYKALRSAANASDSTVRLSKKNNQPLLSLSTTWSGRAFGSNIVTHNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKWKGLENPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRVIACFCEGHALVLYVYITDPEDEHTAVLTYYISTYVDLast
1 -29.500d3p91a1 d.131.1.0 (A:1-127) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  12  2CAFHAKFKEAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEF-----QCLKPITLGINLTHLSKILKALDNDCGLILDVKKVDDA-VLSITSEGTNKTMKFGLNLVDIEAESV........................................................................................................................................................... 127
2 -29.500d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  16  2..LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY-----RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFL........................................................................................................................................................... 126
3 -29.500d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  2..FEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY-----RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQL........................................................................................................................................................... 126
4 -27.000d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  10  2..FEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKY-----EVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEEN......................................................................................................................................................................................... 96
5 -26.800d3aixa1 d.131.1.0 (A:1-126) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  1..MRVKVIDADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEY-----NVEKEEKVGVKLEDFTDVLKTVTKNDSLYLETDENQ......................................................................................................................................................................................... 95
6 -25.900d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  14  2...HIVYDDVRDLKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEY-----DVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSPE......................................................................................................................................................................................... 95
7 -24.300d3ifva1 d.131.1.2 (A:2-112) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  14  1..FKAIV-SAATLRDALDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAF------ESYEAHGGVIGVNLSRLEEVAGMAGAGDLIHLTLDEETRKLNIRID................................................................................................................................................................................. 101
8 -24.000d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  10  1..MIDVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVY-----NIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDES......................................................................................................................................................................................... 95
9 -23.700d2ix2b2 d.131.1.0 (B:127-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  12  4......................................................................................................................................................FKAQLLTITFADIIDELSDLGEVLNIHSKEN-KLYFEVIGDLSTAKVELS---------------TDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQ-----EGYGDFYIAPRAD 119
10 -23.200d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3................................................................................................................................................PEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKD-GVKFSASGELGNGNIKLS---------QTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIAD-----MGHLKYYLAPKI. 129
11 -22.700d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  9......................................................................................................................................................STLSLPSSEFSKIVRDLSQLSDSINIMITKE-TIKFVADGDIGSGSVIIK---------PFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS------GFLQFFLAPKFN 129
12 -22.700d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  1................................................................................................................................................PELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKE-GFRIEAKGDVDSIVFHMT-----------------ETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVG----GRAKVEYILAPRIE 121
13 -21.400d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  18  9........................................................................................................................................................VVVLGEVLKAAVKAASLVSDSIKFIAREN-EFIMKAEGETQEVEIKLT--------------LEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRD-----EGRLTFLLAPR.. 121
14 -21.200d3p91a2 d.131.1.0 (A:128-254) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  12  9......................................................................................................................................................AIITLSSAEFLKITKDFSALGDDSITIGCTKNEVTLTTKGAMCETCMTLSA-----------LENVDSNGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKGEA------CVLKFYLAPKF. 127
15 -21.200d3ifva2 d.131.1.2 (A:113-243) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  10  1......................................................................................................................................PDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDHIRLRVDGA-EETFHIEAEGDTDDVDLS---------------LPPADLISIEAGAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAE----GMGTITYMLAPR.. 131
16 -20.500d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  10  6........................................................................................................................................................ATINASGLKNAIGEIAEVADTLLISGNEE-KVVVKGEGENKVEVEFSKD---------------TGSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEG-----GGKVTYLLAPKLS 119

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 4 4 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.