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Query: [R] KOG4520 Predicted coiled-coil protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFGSSRGGVRGGQDQFNWEDVKTDKQRENYLGNSLMAPVGRWQKGRDLTWYAKGRAPCAGPSREEELAAVREAEREALLAALGYKNVKKQPTGLSKEDFAEVCKREGGDPEEKGVDRLLGLGSASGSVGRVAMSREDKEAAKLGLSVFTHHRVESGGPGTSAASARRKPRAEDQTESSCESHRKSKKEKKKKKKRKHKKEKKKKDKEHRRPAEATSSPTSPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSEALast
1 -7.410d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  24  6......GGARSGKSRHA-EALIGDAPQVLYIATSMAARIQHHKDGRPAHWRTAEC................................................................................................................................................................................................................ 59
2 -7.230d3ju4a2 b.108.1.0 (A:761-910) automated matches {Enterobacteria phage [TaxId: 344021]}  ali model 3D-neighbors follow..  16  121.VKPYNDNVTAGGPSNRFTTA--------YLGSPIVT.................................................................................................................................................................................................................................. 150
3 -6.020d2p0ma2 b.12.1.0 (A:2-112) automated matches {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  17  41........TRNKEEEFKVNVSKY-------LGSLLFVRLRKKHFLKEDAWFCNWISVQALGAAEDK..................................................................................................................................................................................................... 91
4 -5.530d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]}  ali model 3D-neighbors follow..  12  5...DTISGPWGNNGGNFWSFRPVNKINQIVISYG..................................................................................................................................................................................................................................... 35
5 -5.340d3v98a1 b.12.1.0 (A:5-114) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  42........ERGAVDSYDVTVDEE-------LGEIQLVRIEKRKYGSNDDWYLKY................................................................................................................................................................................................................. 80
6 -5.230d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Streptomyces plicatus, endoglycosidase H [TaxId: 1922]}  ali model 3D-neighbors follow..  12  75....QQQGIKGNHQGAGFANFPSQQAASAFA-KQLSDAVAKYGDGVDFDDYAEYGNNGTAQPNDSSFVHLVTALRANMPDKI..................................................................................................................................................................................... 159
7 -4.990d4bpvk_ d.3.1.1 (K:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  13..GPVSVGIDASHSSFFFSGVYDDPSCTGNVNHGVLV-VGYGTLDGKDYWLVKNS................................................................................................................................................................................................................ 66
8 -4.880g1ugw.1 b.77.3.1 (B:,A:) Jacalin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]}  ali 3D-neighbors follow..  18  4ISQTVIVGPWGAKXGKAFDDGAFTGIREINLSYN..................................................................................................................................................................................................................................... 37
9 -4.860d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]}  ali model 3D-neighbors follow..  25  11.....SEGSSG-------EAVRQLQIRDGQFGPATKAAVQRFQSAYGLA...................................................................................................................................................................................................................... 60
10 -4.840d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  14  13TVDGFNELAFGLGDGLPWGRVKKDLQN--IMGAKTFQSLPTLLPGRSHIVVCDLARDYPVTKDGDLAHFYITWEQ............................................................................................................................................................................................ 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.