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Query: [C] KOG4631 NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGGHHEPFKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVGQWAHFKKLILPGWKAGVAFTAALIFVEEAYQYKTHGTTSWDGHHLast
1 -8.100d4nyxa_ a.29.2.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  40.........GIPDY--FDIVKNPMDLSTIKRKLDTGQYQEPWMFNNAWLYNRKTSRVYKFCSKLAEVFEQEID.............................. 109
2 -8.030d1wdja_ c.52.1.27 (A:) Hypothetical protein TT1808 (TTHA1514) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  14  109..........APKAEVRSASQDPEELRAKMGIYLRNGVLLGVLVDEVFRPGKPPLRLEGVERVSLDPELPGFALSLP.......................... 183
3 -7.570d2ahfa_ a.102.1.7 (A:) automated matches {Bacillus sp. [TaxId: 84635]}  ali model 3D-neighbors follow..  21  187...........GDDSSYHTFYFDPENGNAIRGGTHQGNTDGWTRGQAW....................................................... 225
4 -6.920d3fkmx1 a.29.2.0 (X:333-455) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  13  32.......KQNCPDY--YDVIKNPMSFSCIKTKLKKGQYAYP-IFDNCSLYNTSNSVVAITGKNIETYFNNQLI.............................. 103
5 -6.910d5n17a1 a.29.2.0 (A:193-318) automated matches {Yeast (Candida albicans) [TaxId: 5476]}  ali model 3D-neighbors follow..  9  52.........NVPFY--YNYIPRPMDLSTIERKINLKAYEDVSMVKNCKKFNGEAAGISKMATNIQAQFEKLMV.............................. 121
6 -6.620d5enfa1 a.29.2.0 (A:1315-1435) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  32......DLLEYPDY--RDIIDTPMDFATVRETLEAGNYESPMIFSNSKAYTPSKRSRIYSMSLRLSAFF.................................. 100
7 -6.300d5c8ga_ a.29.2.0 (A:) automated matches {Trypanosoma brucei [TaxId: 679716]}  ali model 3D-neighbors follow..  17  48.........GAWNY--YSVITEPMSLRTVLDYIVQGGMND--IWKNCERYNGAESHLAADARRCRAILEKHRE.............................. 118
8 -6.090d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  12  38VGSGKGAAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPDPWPKK---RHEKRRLTYKTFLDTFKRILPENGEIHFKT......................... 146
9 -6.020d4ph2a_ a.73.1.0 (A:) automated matches {Bovine leukemia virus [TaxId: 11901]}  ali model 3D-neighbors follow..  6  9..............NRHRAWA-LRELQDIKKEIENKAPGSQVWIQTLRLAILQADPTPADLEQLCQYIASPVD.............................. 66
10 -6.000d3uv4a1 a.29.2.0 (A:1522-1644) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  33......NKKFVPDY--YKVIVNPMDLETIRKNISKHKYQSR-ILANSVKYNGPESQYTKTAQEIVNVCYQTLT.............................. 105
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.