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Query: [S] KOG4852 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTAPLIRVSRKRTADPHDALILHTKRAKHGGNPLVFTLYKAAGNDLELNGARVLDLPTQEHGMELADEENPLGFVKDEAVGLVGEVEKNVKKPAEQVSLNGRLLQPVTDGGGAAAGSSDDVVYDYYAIHEKRGNPEVVGNLEQDIEGADFRFAKRDELDLGDEDDSDGPPADDEDDSNDEDNWRNDYPDEESYDEDSDNGDPYGISEPDHWHAGEEAYSDESFHRRLQNMDLNDERYEAFYEGDETDEDADLast
1 -7.380d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  84................................................................................................................................................................................MRKESHFTLDYPELLTH.......................................................... 103
2 -6.730d2wdqa3 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26  84..............................................................................................................................................................................TESRG-AHSRFDFPDRDDEN......................................................... 102
3 -6.410d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  19  90.............................................................................................................................................................................KETRWPGYYYRTDYPELNDEE......................................................... 110
4 -6.330d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  20  1..AVRIRLAK-RKHHPIYRIVVMDAKSPREGK........................................................................................................................................................................................................................... 31
5 -6.310d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  27  82................................................................................................................................................................................DRTESHNREDYPKRDDIN......................................................... 102
6 -6.200d1lefa_ a.21.1.1 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  20  1.....MHIKK-----PLNAFMLYMKEMRAN............................................................................................................................................................................................................................. 20
7 -6.100d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  16  66...GIVRSDREYVEYLRFALML----SEFNGKRLIIRTLGVSGTIKRLKRKFLAKYGWK................................................................................................................................................................................................ 118
8 -6.030d1fjgp_ d.27.1.1 (P:) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  29  4.....IRLAR-SKHNPHYRIVVTDARRKRDGK........................................................................................................................................................................................................................... 31
9 -5.910d2qalp1 d.27.1.1 (P:1-82) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  4.....IRLAR-AKKRPFYQVVVADSRNARNGR........................................................................................................................................................................................................................... 31
10 -5.650d1zoya3 a.7.3.1 (A:446-622) Succinate dehydogenase {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  16  97................................................................................................................................................................................ARKESHAREDFKERVDEY......................................................... 117
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;