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Query: [E] COG0006 Xaa-Pro aminopeptidase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNQNPIKRLQDSLVERALDAFLIEKDEDISYFLQDQARSGVLLITRDEAVLFVSPLDKDLYARIQDVVLVSYSKSVDQELGSYIENTGLKTIGFDSEYTPYGIAQKRMNSGYAFSPQSLVAEKLRCVKSTEEIQKMTRAAEIGSAGYDFVLAALRPGITEKELVRMLHVFWANLGIEKVSFPPIIAFGENAAFPHAIPTNRSLKKGDVVLIDIGVCYEGYCSDMTRTVAFGATPEQQLLDGYVAVAEAQRAAIEFCRAGVPCRDVHKEAVRILRAHGMEKAFIHGLGHGVGREVHEYPRLSPFSDATLQLNMAVTVEPGVYFPGVGGIRIEDTIMIGVNENLNLTNRKVSSEIIIILast
1 -113.000[E] COG0006 Xaa-Pro aminopeptidase  ali  100  1MNQNPIKRLQDSLVERALDAFLIEKDEDISYFLQDQARSGVLLITRDEAVLFVSPLDKDLYARIQDVVLVSYSKSVDQELGSYIENTGLKTIGFDSEYTPYGIAQKRMNSGYAFSPQSLVAEKLRCVKSTEEIQKMTRAAEIGSAGYDFVLAALRPGITEKELVRMLHVFWANLGIEKVSFPPIIAFGENAAFPHAIPTNRSLKKGDVVLIDIGVCYEGYCSDMTRTVAFGATPEQQLLDGYVAVAEAQRAAIEFCRAGVPCRDVHKEAVRILRAHGMEKAFIHGLGHGVGREVHEYPRLSPFSDATLQLNMAVTVEPGVYFPGVGGIRIEDTIMIGVNENLNLTNRKVSSEIIII 356
2 -60.400[E] KOG2414 Putative Xaa-Pro aminopeptidase  ali follow..  22  72.YALRRHKLMSLIQKEAQDQTVVVQDNNFLYLCGFQEPDSILVLQSLKAILFVPRR-TDGAIALTGVDEAYTLEEFQHLLPKMKAETNMVWYDWMRPSHAQLHSDYMQKSKNKVRGVQQLIQRLRLIKSPAEIERMQIAGKLTSQAFIETMFTSKAPVEEAFLYAKFEFECRARGADILAYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQAELYEAVLEIQRDCLALCFPGTSLENIYSMMLTLIGQK-ARKYCPHHVGHYLGMDVHDTPDMP--RSLPLQPGMVITIEPGIYIPE--GVRIEDDVVVTQDSPLILSA-DCPKEMNDI 499
3 -53.900[KLB] COG5406 Nucleosome binding factor SPN, SPT16 subunit  ali follow..  20  10TFHKRLGILLTSWKNQDCDSILVTSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKG-EENKKLFEKIIEYIRATN-KKVGVFPKDKTQGKFINEVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDQGKKITHSKFSDQMESLIDDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFD--PDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAPDLEPNFVRNLGAGIGIEFRESSLVNAKNPRVLQAGMTLNLSIGFSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISY 437
4 -44.600[E] KOG2413 Xaa-Pro aminopeptidase  ali follow..  25  179..KDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDSYAIIGLETIMLFIDGDRIDAPSVKEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSETIP-KDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKGVTEISAADKAEEFRRQQDFVDLSFPTISSTGPNGAIIHYAPTNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFGT-PTAYEKECFTYVLKGHIAVSAAVFPGTKGHLLDSFARSALWDSGLD--YLHGTGHGVGLNVHEGPSYKTFSDEPLEAGMIVTDEPGYYEDGAFGIRIENVVLVVPVTFEPLTLVPIQTKMI.. 572
5 -41.700[J] COG0024 Methionine aminopeptidase  ali follow..  24  25.............................................................................................................................EIKSPREIDIMRESAKIVATVLKEISGLVKPGMTTADLDAYAEKRIREMGATPSGFTGSICSSINNEVVHGIPSHKKIRTGDVLKVDTGAYFQGFHGDSCITIAVGEV-TPDAAKLIRVAEEALYKGIEQVKAGAYLLDLAGAIEDHVKVNGFT-VVEEFTGHGVGRNLHEEPSVREMPNVKLRAGMTLAIEPILNADNSLSAQFEHTVLVTETGYEILTDRTK....... 274
6 -41.000[O] KOG2738 Putative methionine aminopeptidase  ali follow..  22  125.........................................................................................................................TSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEV-DDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFS-VVRSYCGHGIHKLFHTAPNVKNKAVGVMKSGHVFTIEPMICEDGKRSAQFEHTLLVTDTGCEILTRRLDS...... 377
7 -27.900[R] KOG2775 Metallopeptidase  ali follow..  18  108..............................................................................................................................RQNFDQYNDLRRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEGIGFPTGVSL--NHCAAHYTPDTTILKEKDVMKVDIGVHVNGRIVDSAFTMSFD----PQYDNLLAAVKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEINIRNLCGHNLDPYIIHGGKSKGGEEIKMEEGEIFAIETGHYAKIPDAGHIPLRLPRAKALLNTITQ.......... 356
8 -26.200[R] KOG2776 Metallopeptidase  ali follow..  22  14..............................................................................................................................LTSPEVVTKYKSAAEIVNKALQVVLAECKPKAKIVDICEKGDSFIKEQTASGVAFPTCISV--NNTVGHFSPDESVLEDGDMVKIDMGCHIDGFIALVGHTHVLQEGPSGRKADVIAAANTAADVALRLVRPGKKNTDVTEAIQKVAAAYDC-KIVEGVLSHQLK-VIDGNKVVTTVDEVEFEENEVYAIDI-VASTGDGKPKLLDTIYKKDESVNYQLKMKASRFII.. 264
9 -6.420[O] COG5549 Predicted Zn-dependent protease  ali follow..  16  189..............................................................................................................................................................................................................................................................AIKPGLAPLSLQGTAR-------------HELGHALGIWGHSDHKEDTADVPAISPRDLRTLY--LY................................... 247
10 -6.170[S] COG3828 Uncharacterized protein conserved in bacteria  ali follow..  12  19...............................................................................................................................RSANVIRALLQRNGFDVTLGQGTAMFADPQLSSFDLIVPAITMSTIEKAELQNLTAAVREGTGLGGFHGTMGDSFRNEPDYQFM-TGGQWVAHITQPDDPITKGVGDFAYRSEQYYMHVDPSNEVLATTTAHFPGIDGVVMPVVWKRRYGAGKVFYSSLGHTA--DEFAVPEM----ALIVERGLLWAAR....................................... 214
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.