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Query: [J] COG0009 Putative translation factor (SUA5), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKRWFVDVTDELSTNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGRVIRLast
1 -115.000[J] COG0009 Putative translation factor (SUA5)  ali  100  1MKTKRWFVDVTDELSTNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGRVIR 346
2 -99.100[J] KOG3051 RNA binding/translational regulation protein of the SUA5 family  ali follow..  43  1METKIQTVDTRLIPSETRSALENAANILRNTDYVAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLLIIPKVYLPLIKKFWPGPLSILLPEANPPVSPIVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGGACGVGVESTVVNGLCDPPVILRPGGISLEEIQSSGGAWERTKSDMETDFIPQTPGMKYRHYSPTAKVLLFVNYTESDAYGVFEITKEKQKIGVLCSKRWNEESFPSPFVFLHMGRDGHEITKNLFAQLRDLDLQGVDFVLVEGVSEENEGLAIMNRLGKAASVVF.. 403
3 -20.500[O] COG0068 Hydrogenase maturation factor  ali follow..  18  201..............FSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAVEKLRQRKRRYD-KPFALMARDINVIEKYCFVNDRERELLVSPAAP---IVLLEKRTEEIASTVAPGQNTLGFMLPYTPLHHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIADYFLHNREIVNRVDDSVVRVIDNKIQIMRRA............................................................................................................................................... 391
4 -6.540[L] COG0084 Mg-dependent DNase  ali follow..  12  64.......VSPSEVMAPGKDWIDTIQKSLQLPQVVAL--ETGLDYCKKYGDKRSQIGLFITQASKAKKPVIIHNRGAQDILDILSERIPDQGGVFHCYFAGNLTY-------------ARNLHETVLALPLD----RILVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMDML......................................................................................................................................................................... 239
5 -6.420[L] COG3666 Transposase and inactivated derivatives  ali follow..  14  1MRNQTATYQQYTMNQ-------DFSDLIPENHVARVVNDMV-----ESLDDQLFDEVYKGGGRPAYHPLYGYTQKWFSCRAIAKALTEHLP-LAARQTPDFRTINRFRSERLKPLMDTLFSALTHLLIKEGYVDGSSYFLDGTKIEA-NANKYTFVWKKSVQKYEEKLQLKIDEMLQ......................................................................................................................................................................... 178
6 -5.520[S] COG4873 Uncharacterized protein conserved in bacteria  ali follow..  17  1................................MLFLDSQFVYGAGAQLFNHFCYFFGTQQKFPPDENQYIIFIATEQFIREIKLLIALLLNENTAKYFQKALLCLKERKLVKIAKVFKNGLTGVVEKVNENSVIVDV................................................................................................................................................................................................................. 114
7 -5.440[L] KOG3020 TatD-related DNase  ali follow..  12  228......FAQHWGRMGVFWTTMEYILSDAEEWKVLAV--EC--GI--CESELEVQKDVFEKHAFKFKLPLVIHCRNLQILKKKMDVNHKFLKIHRHCFFTPAVFT-------------GAPQIQAIRNIPLD----RILLETDGPYFKPGVAPPKVCLPGMAIATASKIAE-----------NLPIEEVLRATFNNTRRVYQ................................................................................................................................................. 433
8 -5.420[F] KOG1385 Nucleoside phosphatase  ali follow..  11  77....................................YSKVQYAAIIDAGSTGSRVLAYKFNRSFIDNKLVLYEELFKERKPGLSSFADNPAEGAHS-----IKLLLDEARAFIPKEHWSSTPTAGLRLLPASKAENILNAVRDLFAK-DGTDEGIFSWFTVNFLLGRLSKTNQA----AALDLGGGSTQVTFSPTDPDQVPVYDKYMHEVV....................................................................................................................................... 259
9 -5.310[L] COG0556 Helicase subunit of the DNA excision repair complex  ali follow..  12  1MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGL----AHQTLLGVTGSG-KTFTLANVIATAQL----PTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVS--EAYVPTTDTFIEKDASVNAHIEQMRL---SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRSRNDMAFERG--QFRVRGEVIDISDQEAVRVEMFDDEIECISLF----------DPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKS.................................................................................... 266
10 -5.270[E] COG2049 Allophanate hydrolase subunit 1  ali follow..  20  59......DTDLATLADELQYVWEHTAVTDHQGKLVEIP--VCYGYGPD------LAEVAAFHQTVISEIVRRHTAQTYTVFMM-------------GFQPGFPYL--------------GGLPE-ALHTPRRAVPRTSVPAGSVGIGGSQTGVYPFASP-------------------GGWQIIGTELPLFRADLNPPTLLAAG............................................................................................................................................... 203
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35