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current user: public |
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Query: [E] COG0040 ATP phosphoribosyltransferase, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 | |||||||
# | Score | Template | Links and tools | %id | First | MGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLVVEGETAK | Last |
1 | -104.000 | [E] COG0040 ATP phosphoribosyltransferase | ali | 100 | 1 | MGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLVVEGETAK | 213 |
2 | -72.900 | [E] KOG2831 ATP phosphoribosyltransferase | ali follow.. | 23 | 7 | LEDRLLFAVPKGRLYESCVNVLKGSDIKFR---RNPRLDIALVQNLPIALVFLPAADIPRFVGTGRVHLGITGQDQIAEARLRIEELVDLQFGGCKLQVQVPESGDITSVGRRIVTSFEYLVAEYFVDSGIKTEISFVSGSVEASCALGIADAVVDLVESGETMRASGLKPIETVMSTSAVLVRSSNCSSELEPLLQTIITRIRGYIIAQQYV | 239 |
3 | -7.410 | [R] COG1427 Predicted periplasmic solute-binding protein | ali follow.. | 12 | 24 | .........................................KLLEKDCHFLIQTPATLNREMKAGRIQVGPISSFAYAENVDEFVLMPNLSVGPVGSIFLYTKRPLEELEGSRIALTTTSATSVHLLK-GVNVTYDEMDPSFDEMMQDHDGCLLIGDEAIVTSWREEVETYRYDLGEL-AVFAVRKDAIARQRAILEELYTAFVLSKEKNRKE | 214 |
4 | -7.250 | [K] COG3888 Predicted transcriptional regulator | ali follow.. | 9 | 71 | .EKLLRIGCLRSTFVSVAKNYSESKGIDLI-------------------RFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTARED | 270 |
5 | -6.860 | [P] COG4521 ABC-type taurine transport system, periplasmic component | ali follow.. | 11 | 22 | .AVNVTVAYQTSAVAQADNTFAKESGATVD-------------------RKFDSGASIVRALASGDVQIGNLGSSASQQVPIEVFLLASKLGNSEALVVKKTISKPEDLIGKRIAVPFISTTHAALKHWGIKPGQVEI-PAIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDS-APTLDVWVVRKDFAEKHPEVVKAFSKSAIDAQQ..... | 233 |
6 | -6.690 | [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components | ali follow.. | 12 | 76 | ....LIIAKEKG--------FFAKYGLT------------------NVELSKQASGSARDNVEIGSAGGGIDGGQWQMNQKIPMYVLCQLITHGNGIAIALFSKLKASPTPFTAAQTFPAVNQDFWIRYWLAAGGIDPDADVKLNMKTGTMDAFSTGDPWPFRIVKDKVGFMAALTAEEEYLAMRSDWVDQHPKATKALLKGLMEAQQ..... | 301 |
7 | -6.520 | [R] COG2107 Predicted periplasmic solute-binding protein | ali follow.. | 8 | 30 | ..............................................EIEHVIEDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKSEISLDGKRIAVPGRYTTANLLLKLAVEEPVEMPFDRIIQAVLDEEVDAGLLIHEGQITYADYGLKCVLDLWDW-GLNAIRRDLSVEVQEEFLRAMRE........... | 197 |
8 | -6.310 | [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | ali follow.. | 8 | 25 | .PQNIRIGTSQGEL----------VGFDIDLAKELCKRI-----NTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQ-QPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRA........ | 241 |
9 | -5.920 | [E] KOG0503 Asparaginase | ali follow.. | 11 | 447 | ..AMINAAVAEGDP--KKINNLKAYGADLSGTNHDQRTALHLACQLGVKYLLQNGVSVHVRDRYDRTPLLEAVAQLLINCGAHLTGSSR---VGEQLCAAAARGSMI--------------RLKSYQYAGADLAQSDPSGALHVAALHGFPEVVQYVLPYFENPNELGLTAMDYAERGGHAAVME............................ | 627 |
10 | -5.350 | [E] COG4812 Ethanolamine utilization cobalamin adenosyltransferase | ali follow.. | 12 | 21 | .....EIHLPADRLTPSARELLESRHLRIKFIDEQGRLFVDDEQQQPQPVHGLTSSDCRQPVAKKPDTLHLSAEKMVAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLDIRSRLGNIMRADALGEPLGCQAIVGLSDEDLHRLSDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVFITRSFEVLRPDILQALNRLSSTV...... | 241 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25. |