current user: public

If you have questions about the server, please let us know.

Query: [O] COG0068 Hydrogenase maturation factor, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .
# Score Template Links and tools%idFirst MATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQQECPPLAKINELIRTPYQGELNFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPECEDSYHDVENRRFHAQPVACHTCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAVEKLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLPYTPLHHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIADYFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIKLPPGFDNIPQILAMGSELKNTFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLGKELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLLADYTQFQRLATFKPVAMIGGKQAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQPINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCSYEGQAAIALEAIADIHTLNNPKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKYLGQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAARLIKQLast
1 -275.000[O] COG0068 Hydrogenase maturation factor  ali  100  1MATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQQECPPLAKINELIRTPYQGELNFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPECEDSYHDVENRRFHAQPVACHTCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAVEKLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLPYTPLHHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIADYFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIKLPPGFDNIPQILAMGSELKNTFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLGKELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLLADYTQFQRLATFKPVAMIGGKQAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQPINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCSYEGQAAIALEAIADIHTLNNPKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKYLGQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAARLIKQ 785
2 -21.500[C] COG1254 Acylphosphatases  ali follow..  29  4.VCIIAWVYGRVQGVGFRYTTQHEAQRLGLTGYAKNMDDGVEVVACGDAAQVEKLIKWLKEGGPRSARVDKILTEPHSPRETLTGFSIR........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 92
3 -20.500[J] COG0009 Putative translation factor (SUA5)  ali follow..  18  15........................................................................................................................................................................................................STNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPTLILPCKPDA-----LSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIV-DGGPTGIGVESTVLSCADDIPVLLRPG.......................................................................................................................................................................................................................................................................................................................................................................................................... 203
4 -17.600[J] KOG3051 RNA binding/translational regulation protein of the SUA5 family  ali follow..  17  27...............................................................................................................................................................................................EHTRVSIPPSETRSALENAANILRNTDYVAFPTETVYGLGADARRTEAVLSIYKAKNRPANPLIVHVASLDQLRRLLIIPKVYLPLIKK-PGPLSILLPVVDEANP-PVSPIVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLIL-DGGACGVGVESTVVNGLCDPPVILRPG.......................................................................................................................................................................................................................................................................................................................................................................................................... 247
5 -15.900[O] KOG2708 Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold)  ali follow..  13  56............................................................................................................................................................................................................................................................................................................................................LEGSANKLGVGIVKHPLLP---KHANSDLSYDCEAEMLSNIRDTYVTPPGE---------GFLPR--------------DTARHHRNWCIRLIKQAEADIKSPTLDID------------------------VICFTKGPGMGAPIAARTCSLLWDVPLVGVNHCIGHIEMGREITK----AQNPVVLYVSG-GN---------QVIAYSEKRYRIFGE----------------------------------------------------------------TLDIAIGNCLDRFARTLKI-----PNEPSPGYNIEQLAKKAPHKE------NLVELPYTVKGMDLSMSGILASIDLLAKDKVTVEDLCYSLQENLFAMLVEITERAMAHVNSNQVLIVGGVGCNVRLQEMMAQMCKDRAGQVHATDNRFCIDNGVMIAQA.......... 387
6 -15.600[O] COG0533 Metal-dependent proteases with possible chaperone activity  ali follow..  17  6................................................................................................................................................................................................................................................................................................................................................................................IETSCDETGVAIYDEEKGLIANQ---LYTQIALHADYGGVVPELASRDHIRKTAPLIKAALEEANLTASDID------------------------GIAYTSGPGLVGATIARSLAYAWNVPAIGVHHMEGHLLAPMLDDN--SPHFPFVALLVSG-GHTQ--------VRVDGVGKYEVIGE----------------------------------------------------------------SIDDAAGEAFDKTAKLLGL-----DYPGGAA--LSRLAEKGTPNRFTFPRPM-----TDRAGLDFSFSGLKTFAANTVNQEQTKADIAYAFQDAVVDTLAIKCKRALKETGYKRLVIAGGVSANKKLRETLAHLMQNLGGEVFYPQPQFCTDNGAMIAYT.......... 313
7 -15.000[O] KOG2707 Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold)  ali follow..  15  28................................................................................................................................................................................................................................................................................................................................................................................IETSCDDTAVAIVNEKREILSSE---RYTERAIQRQQGGINPSVCALQHRENLPRLIEKCLNDAGTSPKDLD------------------------AVAVTVTPGLVIASAAIGFAKKHRLPLIPVHHMRAHALSILLVDD--SVRFPFSAVLLS-----------GGHALISVAEDVEKF-------------------------------------------------------------KLYGQSVSGSPGECIDKVARQLGD-SEFDGIHVGAA--VEILASRASADGHLRYPIFLPNVPKANDQIKGSYLNLLERLRKNSETSIDIPDFCASLQNTVARHISSKLHIFEQEKLPKQLVIGGGVAANQYIFGAISKLSAAHNVTTIKVLLSLCTDNAEMIAYSGL........ 347
8 -14.400[K] KOG4577 Transcription factor LIM3, contains LIM and HOX domains  ali follow..  12  13.........................................................................................VKGLPEMLGVPMQQIPQCAGCNQHILDKLDRHWHSSCLKCADCADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPAQDFVYHLHCFACIICN----------------------------RQLATGDEFYLMEDG--RLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 189
9 -14.200[R] KOG0490 Transcription factor, contains HOX domain  ali follow..  2.......................................................................................................MVHCAGCERPILDRLDRAWHIKCVQCCECSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPARSKVFHLNCFTCMVCN----------------------------KQLSTGEELYVIDEN--KFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLET---------------------LKAAFAATPKPTRHIREQLAQELNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGPPSQAQSPADSSFLAASGPGSTPLGALEPPLA-GPHAADNPRFTDMISHPDTPSPEPGLPGTLHPMPGEVFSGGPSPPFPMSGTSGYSGP---NEAAVW........................................................................................................................................................................................................................................................... 402
10 -13.500[T] KOG1701 Focal adhesion adaptor protein Paxillin and related LIM proteins  ali follow..  14  413.......................................................................................................FGRCARCGENVVGEGDQVFHVDCFTCIICGQPFYAVEKKAY--EPCYINTLEQCNVCSKPIMERTGKAYHPHCFTCVMCHRSLFTVDAGGKKFAPRCSVCKEPIMPAPGQEETVRIVALD---DFHVHC----EDCGGLLSEGDNQDGHILC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 593
11 -13.200[TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance  ali follow..  19  6..........................................................................................................CHGCEGEVVTALGKTYHPNCFACTICKRPFP---AQPMSSSPKETTFSSNCAGCGRQALLALDKQWHLGCFKCKSCGKVLTYISKDGAPYCEKDYQGLFGVKEACHQFITGKVLEAGD---YHPSC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 156
12 -13.100[K] KOG2461 Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains  ali follow..  12  426.NYAAIYGSQDFQHELSKPLYTSASPAFG-GGGGMGGGFGMGGSAHTSSFHQLPFVNHSSSSHNDSSFNGVPNYVQQQENGKTRYACKDCNKTFGQLSNLKVHVRTCEICTKEFTQLAHLQKHHPH-RCDICDKRFSSTSNL-HLRLHNGQKPYT-CDVCDAKFTQYVHKRLHARPYSCGTCGKKYISPSGTCKEEDMKDSMRDDLMDIKGEIDEGSMSGSGYGNLGIF-PIETIYSKYNLPNASLLGQGPSGMQEQQAP-PPTSQQQQHMMYGNTMGHMGQGSHLQGPPPPPQ------HFQMDHSGMQNGGGIPHQHQL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 777
13 -12.800[J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation  ali follow..  20  2............................................................................................SVKLSIREEVEPPICSSCGKIIHPREK----GVEFYCPNCGEVL-----------------IRRDHMCRKQ----------GAEYICPNCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 61
14 -12.500[O] COG2192 Predicted carbamoyl transferase, NodU family  ali follow..  14  11............................................................................................................................................................................................................................................................................................................................................................................HDSAAAMIEDGRIVAAAQEERFTRKKHDADFPA-------NAVAYCLSAAECEMTEVDHVV----------FYDKPILKFERLLETYLATSPRGFRSFRMAMPLWIKEKLFQKKLLRRYLGKLPGSLLFTEHHLAHAASAFFPSPF----ASAAVLTMDGVGEWCTTSLGHGR--------------------------------------------------------------------GKDLDILKEIRFPHSLGLLYSAFTYYTGFKVNSGEYKGLAPYGRPLFVQKILDHLIDLKEDGSFRLDQRYFDYCAGLTMTSPAFHELFGAEPRRPDLAASVQAVTEEVVLKLARFARQETGERHLCLAGGVALNCVANGKLLKKRIFDDIWIQ-----AAGDAGGAVGSALAAWHGYLGN 355
15 -11.800[S] COG4306 Uncharacterized protein conserved in bacteria  ali follow..  11  16.........................................................................................................ATTAADQK--HELWEAF------CSHSGEATI-----------------LQYPKCSASIRGDDY---YEPPTFCNNCGSRFPWAERKIAGTVELVEAGTDLTPDEVQQFRTDLTQLTKD--------SPKTQVTCLRFKKVMAKVRTSVASGVRDSEAAKKAI..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 158
16 -11.800[L] COG0551 Zn-finger domain associated with topoisomerase type I  ali follow..  14  1...................................................................................................VETDI-KCPTCGRNMAIRTAST---VFLGCTGCGTAMDSYVIDAHRK--HICGNNPNCDGYLIEEGSFKIKGYDGPVVECDKCGADMHLKLGRGKYMGCTNCDNTRKILKNGEVAPDAYFVLRDGASGVFMSAHNFPK--------RETRPVKIAELVQYRERLPEKLAYLADAPQKDPEENEAIV------RFSRKEKKQYVTSEKEGKATKWIVDFTNGKWVERKK.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 270
17 -11.300[S] COG5134 Uncharacterized conserved protein  ali follow..  12  5...................................................................................................IPPE-----------GPNAKRRFEMPFVWCNNCGTRFNAVKKEIGSYYTTKIWSFSLCHLCSNPITDPKNTEYIVAS------GGRRKIEPQDINERPAKAENDEKVPSDAIEALETQLTQQKS---------EKHNSSVINFIYEKNERLWS--RLRKQFRERKKIEKKQEAKDLSLKNRAALDIDILPPSSSDKDKALLLL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 206
18 -11.300[K] KOG2462 C2H2-type Zn-finger protein  ali follow..  14  152..........................................................................................................CPYCEKVYVSMPARTHNQGC-ECQFCGKRFSRPWLL-HIRTHTGEKPFK-CGVCEKAFADKSNLRAHIQPHTCARCGKAFALKSYLYKHEESSCMKNRGGVPGSGAASGNRPPSSPK-LAPGSPAAASDSAKSTLANKLLQKEKDRRQAAMAFQGPEVTAYSHATSAQEEYEKFKRINVIQPKVMPHRVPSLYQDLLPNRHVPLALPLAMPYHFQG------------ATSTGQSDPTVQEQPVDFSPKNNFTHSAKTSPFELTGNYAM.......................................................................................................................................................................................................................................................................................................................................................................................................................... 440
19 -11.300[TZR] KOG1704 FOG: LIM domain  ali follow..  10  89.............................................AGEKWRQRQSRYQLPPQDSDVRYCEDLNAEEADTLRM---RTRKTECLGSGVVQYAPFDTKCEKMLQECLEAEGRSWHFHHFQCAQCDQKYMQRANKPVLKCFHSSSSTFSCTTCRLPHMSQGDLHWHASAECCCVCSKNL--LGVKYSRVGESLFCGYQTCGGEDEELLDEDRLGSPHRKVTQKSTKVVRIPASPRVAPRHPHVIQQNLTTTMTIQKPSVVIQNQRPKPPQRAPPPPPVLPCSSNNSPNFDKKYSHELPTSPNHHNYYSKTPNNLLTGYPEMDGYSTSSSSDSDDEQLYISNIMAAASLSRVPA-----KSSSRKSKKNEPMMMSGGGVRMAKKKKS........................................................................................................................................................................................................................................................................................................................................................................................................ 483
20 -11.200[K] KOG2907 RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12  ali follow..  12  1.................................................................................................MSVVGSLIFCLDCGDLLENPNAVLGSN--VECSQCK-KSVVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGCTSCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 118
21 -11.100[R] COG5048 FOG: Zn-finger  ali follow..  13  540...............................................................................................................KYVKEMPDKTF-----ECLGCTKTFKRRYNI-HIQTHLEDRPYS-CPGCDKAFVRNHDKKSHQEAYACP-CGKKF---------------NREDALVVHRSR-----------SGGKKYENVVIKRSPRKRGRPRKDGTSSPIKENINKDHNGQLMFKLEDQRRERSYDGNGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 697
22 -11.000[K] COG5175 Transcriptional repressor  ali follow..  14  29......................................................................................................EEDYCPLCIEPM-DITDKNF-FP---CP-CG--YQICQ---YNNIRQNPELNGRCPACRRKYD---DENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQVYVVG---INPPVPYEEVAPTLKSEK------FG----------QYGKINK-------------IVVNRKTPHSNNTTSEHYHHHS-PGYGVYITFG----------------------------SKDDAARCIAQV-DGTYMDGR-------------------LIKAAYGTTKY----------------CSSYLRGLPC--PNPNCMFLHEPGEEADSFNKRELHNK.............................................................................................................................................................................................................................................................................................................................................. 270
23 -11.000[O] KOG0824 Predicted E3 ubiquitin ligase  ali follow..  10  6........................................................................................SSPSQQLQQAINSTIDKECAVCYSEMILP---------TTIPSCGHKF--------------------CFICLKGVSVSNNGD-------CPICRGPID-EVDDEDVKPDVKKLQEELKKQQAAAAAQKMFWLYRGRHQGWWRFDPRIEKEIEEAFTHQMPMTEVTICGNPYIVDFSQMCQYPKNQSNYSRN-------VKRVNSTDFDSLNVKGMS------GVFVA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 215
24 -10.900[TZ] KOG2272 Focal adhesion protein PINCH-1, contains LIM domains  ali follow..  12  8..........................................................................................................CTRC-EKIVNSNGELWHTQCFVCAQCDGIFYEFEGRKYCERDFHVLFAPCCNKCGEFVIGAMSASWHPQCFRCQLCAKELAFIKNQNRALCHECNAKGRYVCQKCHGLIDEEPLRFRG---YH-ACGTELDSTAREVKSRPGLAANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRGLAYCETHYHQLFGNLCFVCNQVIVFTALNKAWCVHHFACSVCDTKMTQKSKFYEYDEKPVCKKCYDRF........................................................................................................................................................................................................................................................................................................................................................................................................................ 315
25 -10.200[O] KOG0320 Predicted E3 ubiquitin ligase  ali follow..  19  248........................................................................................PKRVNRDIDESQKEELYKCPICMDSVSKRE--------PVSTKCGHVF--------------------CRECIETAIRATHK--------CPICNKKLTARQ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 313
26 -10.200[O] KOG1645 RING-finger-containing E3 ubiquitin ligase  ali follow..  19....................FIEFGEAFGHYGEEEDEEEEDEEEAYVDYGEVQEEDEEEEEEEDSERQTREYIDVLDSPVRVSQNESEGIENQNRRMSNGNKVTLRDCLVL-SVWKFGPA------VANTKSGILDS--------------------IVFPVDT-----MDIPASTSGFSSDEVEGSLRD--------------------VRKIYASRVAAV----------DDEAHKRILFLEAKLRSIEQKTASWSNKEVQWKITEAELRLEVTKLKKKIANMESTTKGSQSQSNVASQEKYIPAHNIYQEIFDIDGGRQILLYARRLSGVGGTFVLTQMSLHSPCEIDDILLP-------RTTRAILSPHNNGLAVFLGKKLSVISLESHNTVLSYDLPAAPLKSSHHIYAGLDMRQTTGPFASMTGLTTNPVHTVHHLSGNSTPTSDVRTL--LSASSIGLCQWNISGSEGSPSLVSETGNPGVCISSSYCPRSNHIVASYRPRV.................................................................................................................................................................................................................................................................................... 479
27 -10.200[S] COG4640 Predicted membrane protein  ali follow..  11  1.........................................................................................................................................................MKSCPKCGQQAQD--DVQI------CTQCGHKFDSRQALYRKSTDEDIQTNNIKMRKMVPWAIGFFILILIIILFFLLRNFNSEAQTKILVN---------AIENNDKQKVATL--LSTKDNKVDSEEAKVYIKNTVHKLNKSKTSVASYIQTRSGQNILRVSKNGTRYIFFDNMSFTAPIVKPKEKTKYEFKSGGKKKMVIAE-IGNFILGTYRIPAMKSTENGDFAGYLKFDFRQSNS-ETVDVTEDFEEANITVTLKGDTKLNDSSKKVTINDREMAKTYGPYPQNKDITISAS............................................................................................................................................................................................................................................................................................................................................... 307
28 -10.200[T] KOG4846 Nuclear receptor  ali follow..  15  134.........................................................................................SNGHTTQRHHIGKAISFCKVC-----DKAS--YHYGVTSCEGC--RRSIQRKIDYKRESRNR-----CQYC----------RFKK----CLDSGMSVRQMKFRNAMRDDKSPDSVFVPEISTLERQEEVDAVYEAVLRAHTTFSFYTDIKIRSIVARPFNVRINEDSKMNRLNAWQIYAHEIDVDIKEVVNFVKPAVLLRKNAFPLYLLRIVRGMSNRGLMLGRLIDFKSLQ-LLYGSLADEMLAFANHIITIGCTDGDIALFIVLILCQPLTTEQQFSTNFKSQLQLLEMFDFYKKVLFQKMTCRID------GCDTYKQLMKCIHELNRLNELHKQQLNILRENLSFLNLPPLVVEMFQ-LSTLPLPVNHNNQENQYTPAPEHQSPQPQQPTPNQQQTPV...................................................................................................................................................................................................................................................................................................... 532
29 -9.980[K] KOG2906 RNA polymerase III subunit C11  ali follow..  17  1.......................................................................................................MEFCPTCGNLLRYEGGGNSRF---FCSTCPYVAYIQRQVEIKKKQLLVKK-APCPRCGHDFKSMQIRSADEPESRCLKCE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 100
30 -9.970[O] KOG0823 Predicted E3 ubiquitin ligase  ali follow..  16  69...........................................................EHRDSTAGVIHERSRERLVENGENKTYLIAKALNMEKTSSVPGGFFDCNICLEKAEDP-----------LTCCGHLF--------------------CWGCFYQL------LIYLNIKECPVC----------------------------DGEVTDAEVIPIYGNG------DDCDGTKPKLEDCGISLPPRPNAKRVESVRQ.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 203
31 -9.900[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  24  1..............................................................................................................................MPCESCGVEFTVFR-----RKRA-------CFDCKRYY--------------CANCIAS---------------------------------------------RCSVFAQRPLSRLLKLKPKDLIFY-LQSKHIST-------GCLEKEELVG----LVLTHVAQVDRSRGSNASSNSPGRGQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 108
32 -9.860[DR] KOG4739 Uncharacterized protein involved in synaptonemal complex formation  ali follow..  14  2......................................................................................................DWIQCNHCGIKPNQT-------KLY-LTACG----------------------FCQNCTKA----------AFNSQCYLCKKPLKVDEINKNLRPDLMELFKDPRQLASDLVNE-----LKQVVAFQ---AKQREIYVKCKNAEAKKDTERFAEARSKHVEKTQEIEKRKKAFLEDNVKLK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 136
33 -9.780[U] KOG4173 Alpha-SNAP protein  ali follow..  82..........................................................................................................CAGCCQVFDALDDYEHHY---VCSFCKRAFPSGHLL-FQILSERQDMYQ-CEGCTEKFKTSRDRKDHMADFRFDKPKKSRSPASAEAPGDSGERSEGEAM----------------------EICSEPVAASPAPAGERRIYRHRSVSELLRILGCTWAAALLILNSER.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 262
34 -9.450[S] KOG2990 C2C2-type Zn-finger protein  ali follow..  14  2..........................................................................................GERKGVNKYYPPD-----------FNPEK-RFEMPYIWCDGCGVRYNAEKKKVGNYYTTPIYRFRMCHLCVNYITDPANCDYVIVS------GAQRKEEADNEQVLTTEHEKKQKLETDAMFRLEHGEADRST---------LKKALPTLSHIQEAQSAWKDDFAMLRRRFREKKKAIQEEEERDQALQAKASTIPLVPETEDDRKLAALLK................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 232
35 -9.420[K] COG1594 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS  ali follow..  20  3..........................................................................................................CPKCGSLMTPVNGR------YVCPSCGYEVSKKKEDLKIVNKSNDKE-AICPRCHHKYVLKQTRSADEPETTCEECG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 94
36 -9.200[K] KOG2691 RNA polymerase II subunit 9  ali follow..  16  3......................................................................................................TMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNPTLPRTKAVRCSKCQHRFFQATARGEEGMTLVCPNCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 109
37 -9.160[O] COG3058 Uncharacterized protein involved in formate dehydrogenase formation  ali follow..  16  123.....................................LAVIENLEKASTQELEDMASALFAS--DFSSVSSDKAPFIWAALSLYWAQMANLIPGKARAEYGEQRQYCPVCSSMVQIGTTQGLRY--LHCNLCETEWHVVR---------------KCSNCEQSSLDDEQAAIKAE--SCDDCGTYLKILYQEKEPKVEAVADDLASLVLDARMEQEG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 293
38 -9.110[R] KOG4582 Uncharacterized conserved protein, contains ZZ-type Zn-finger  ali follow..  14  1.................................MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILREIELYLFQERQLPKCDVRTFWIDADKDEIEIVNQNDYEIFLAKCESSVDDPSNFTIHDAVECDGCGFRYKCVQCSNYD----------LCQKCELAHKHPE----HL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 164
39 -9.100[S] KOG4623 Uncharacterized conserved protein  ali follow..  13  43..........................................................................................................CWFCNGNVRVPYQDRNSW---TCPSCG---DYNRDITRDTAQPPAPKNGLCDQCNEVYRERLEKQFRL----CSSCERHV-----------------NKVLHEKKKMVLSSKF...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 190
40 -9.050[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  12  1MLMATIHVDGKEYEVNGADNLLEACLSLGLD--SVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNH--------PHDCPVCENCLQDMTGHSFRRYRFPFISCIACYRCVRYYKDYAYGAHDNVYNLVEICPTTDKTHSERYNRKWDMQPSICQQCGCNISPGERYGELRRIENRYNGTV---------NHYFLCDRGRFGYGYV-TLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFAEIESYDAVLVLGETGARVALAVRQAVKGKAREAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQ----ALAGAKGTNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELET--GRADAVV-----VLENDLHRHASATRVNAALAK---APLVMVVDHQRTAIMENAH------------LVLSAASFAEDGTVINNE------GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSRE........................................................................................................................................................................................................... 665
41 -9.040[O] KOG4400 E3 ubiquitin ligase interacting with arginine methyltransferase  ali follow..  12  62.........................................................................................SEYRRLRRINQRNRDKFCFACVQDCPEAKDNV------ICFRCGSKEHSLNACSKKGPLKFAK----CFICHENGHLSGQKGLYPKGGCCKFCS-------SVHHLAKDCDQVNKDDVSFGHVVGVAG-----------TTGADEDVYHEYAKTVAAPTKKRP..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 208
42 -9.020[R] KOG1819 FYVE finger-containing proteins  ali follow..  14  512................................................RKVLKLILQPSEIIPVYEVVNAQVANSQTEGEETGVEAQETLPLPAFMGVRWVPDCEQCTACSMP-FNFVRRRH-----HCRNCGRIF--------------------CHKCSCNTISIPEHGYDRKPVVSSPQSNLSLLTRQDQFSCNLLHQSHHIHHLFNRSLVPH......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 655
43 -9.000[I] COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)  ali follow..  11  96.........................................................................................................................................................................................................................QTDVMIELGGEDAKMTFFDNGTQELRMNGT-------GGTGAFIDQMAALLKVDANGVNELAKNYEKLYPIASRCGVFAKTDVQPLLNEGVRREDIA---ASIFQAVVNQIKGNVAFLGGPLFFMSELRKRFIETLDLKE-ENIIFPENPQLFVAMGAALYEETSQKTATDLIHSLENDDSDSLIPQDTMDKLFIDAGSTTTKVVLIDDEGNILYDHYG--SNNGEPLESVINILKDVYAKLPADVYIAKS------TVTGYGEHLIKAGLHVDYGEVETMAHYKAADYFN-------PGVDFILD-----------GGQ-------------DMKAMRIRDG----------------------------------------------ALSSIQLNEACSSGCGSFIETFAHSLKHDVREKALLAEHPVNLGSRCTVFMNS----------------------------KVKQVQKEGATVGDISAGLSYSVIKNALYKVIKVKRPEELKKIVVQGGTFYNEAVLRAFEKISERE--------VRPSIAGLMAYGCALISLDNQEAN 583

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.