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Query: [G] COG0120 Ribose 5-phosphate isomerase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTERNTSTDSPEKRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQLDKLVPVEVLPFAKEPVVKKIRELGGKPQLRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQKLast
1 -102.000[G] COG0120 Ribose 5-phosphate isomerase  ali  100  1MTERNTSTDSPEKRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQLDKLVPVEVLPFAKEPVVKKIRELGGKPQLRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQK 234
2 -87.200[G] KOG3075 Ribose 5-phosphate isomerase  ali follow..  33  12..ESLGNPLEDAKRAAAYRAVDKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKSKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHRQGVPIEIVPSSYVRVKNDLLEQLHAEKRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSVEVTEK. 258
3 -12.600[KG] COG1349 Transcriptional regulators of sugar metabolism  ali follow..  20  68..DHKTLINTHKKALIAAAAVKYIHDGDSIILDAGSTVLQMVPLLSRF-----SNITVMTNSLHIVNALSEHGQLAENAFEQFSFDKLFMGTDGIDLNVGVTTFNEVYTVSNAMC-NAAREVILMADSSKF....................................................................................................... 211
4 -10.600[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit  ali follow..  14  1........MALTREQMAQRVARELKDGYYVNLGIGIPTLVANYVPEGIDVMLQSENGLLGMGAFPSEAEVDADMISFAMIRGGHVDLTVLGAFEVDVRGNIVKGMGGAM-----LVAGAENIIVTMTHAS---------------------DGESKLLPYCTLPLTGCGCIRKVLTDLAYL----------EIEDGAFILRERPGVSVEEIVAKTAGKLIVPEH.......... 212
5 -8.110[R] COG4076 Predicted RNA methylase  ali follow..  21  14........GDHERLAAFREAISSRARGLTYDLGAGSGI------LSFFASEYADRVIAIERDPKIAACAGENGLDNVSVVNEDALHYEFSAADTIICEM------DTALIDEEQVPV-------LRRALKFLRNDGTVIP.............................................................................................. 129
6 -7.450[GQ] KOG2741 Dimeric dihydrodiol dehydrogenase  ali follow..  11  12...............................LSCTNKVRKLSRAINLSPNATISAIATTSSIEEAKSFAKSNNFPLLEDPDVDAVYFPIPTRLHVEWATLAAIKGKHILL-DKPVALNVAEFDQIVEACEVNGVQ-----MDGTQWMHSPRTDKIKEF-------NDLESFGQIKSVYSCFSFAASDDFLKHDIRVKPGLDGLGALGDAGWYTIQAILLVNNFK.......... 204
7 -7.130[J] KOG1465 Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7)  ali follow..  14  141.....ETELETSSENICVQAEEHIHSSIILTLGHSRSVENFLKRAIKKRQFLTIIVAECAPACRAASLANEKNVEIVVIPDMSRVNKVIIGTHSVLANGGLRAACGAY-----TVALAAKHVIVLAPMYKLSPLH................................................................................................... 280
8 -6.860[J] COG1184 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family  ali follow..  13  102.....VSRAKKSRNKIAEIGVDFIADDDII--GYSRAVFSLLNHAANKFIRFRCVVTESRPSKQGNQLYTLLGIPVTLIVDIDKVDKVFVGAEGVAESGGIINLVGTYSVG--LAHNARKPFYVVTESHKFVRMF................................................................................................... 240
9 -6.840[J] KOG1466 Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3)  ali follow..  14  161.....GEISCKARRIIAMLSQDFIFDGCTI--GLSRVVLEILKTAAQNNKLFRVLCTEGRPDGTGVLLSSELDIPVKLLLDMDEVDMVFVGADGVVESGGIINMMGTYQIA--VAHSMNKPVYVAAESYKFARLY................................................................................................... 299
10 -6.710[A] KOG0330 ATP-dependent RNA helicase  ali follow..  15  58CEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLGSGKTAAFALPVIQELWNNPSPFFAVVLAP--TRELAYQISEQFEAIGGSIGVRSVV----------------GGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSL-------------------------KNLKYLIMDEADRLLDMDFGP-----IIDKILKIIPHERRTLLFSATMTSKV.............. 234
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.