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Query: [P] COG0155 Sulfite reductase, beta subunit (hemoprotein), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNEKHPGPLVVSGKLSDGERMKSESNFLRGTIAEDLNNGLTGGFSGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMMLRCRLPGGIITPQQWLGIDKFAADNTLYGSIRITNRQTFQFHGILKGNVKPAHQLLNELGLDALATANDVNRNVLCTSNPVESALHQEAYEWAKKISEHLLPRTRAYAEIWLDAEKVATTDEEPILGATYLPRKFKTTVVIPPQNDVDLHANDLNFVAVADKGKLIGFNVLVGGGLSIAHGDKNTYPRKASEFGYIPLKHTLAIAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVEKRAGVSFSAIKPYQFIGRGDRIGWVKGVDKKWHLTLFVENGRLLDYPGRSLKTGVAEIAKIHQGDFRLTANQNLIVAGVPEKDKARIEALAREHGLMDDNVTSQRENSMACVSFPTCPLAMAEAERFLPEFVTRVEGILQQHGLADEHIVLRVTGCPNGCGRALLAEVGLVGKAVGRYNLHLGGNREGTRIPRMYRENITADEILLITDQLVGRWAKERHVDEGFGDFVIRAGVIAPVIDSARDFYDVQEAMLast
1 -146.000[P] COG0155 Sulfite reductase, beta subunit (hemoprotein)  ali  100  1MNEKHPGPLVVSGKLSDGERMKSESNFLRGTIAEDLNNGLTGGFSGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMMLRCRLPGGIITPQQWLGIDKFAADNTLYGSIRITNRQTFQFHGILKGNVKPAHQLLNELGLDALATANDVNRNVLCTSNPVESALHQEAYEWAKKISEHLLPRTRAYAEIWLDAEKVATTDEEPILGATYLPRKFKTTVVIPPQNDVDLHANDLNFVAVADKGKLIGFNVLVGGGLSIAHGDKNTYPRKASEFGYIPLKHTLAIAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVEKRAGVSFSAIKPYQFIGRGDRIGWVKGVDKKWHLTLFVENGRLLDYPGRSLKTGVAEIAKIHQGDFRLTANQNLIVAGVPEKDKARIEALAREHGLMDDNVTSQRENSMACVSFPTCPLAMAEAERFLPEFVTRVEGILQQHGLADEHIVLRVTGCPNGCGRALLAEVGLVGKAVGRYNLHLGGNREGTRIPRMYRENITADEILLITDQLVGRWAKERHVDEGFGDFVIRAGVIAPVIDSARDFYDVQEAM 576
2 -49.400[C] COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits  ali follow..  13  4........................................................................................................................................................................................................................................................................................................DPVAQRLQKRLPVPYTEWLPELIRRNVGKWVDRKFHGYGII-----------EPISSTGDRVFTVKVGTPPNFMSTETLRKFIDIADKLGIGGIKITRNGNLEILTDSLDKALKIKEEVEKMGFPVGGWGRSMWGINSCTAFLTCTTAVVDSPSITKALGDALAPYFKEES-LPAKLRIFVSGCPAMCAGGTAIDIAIVGQWGAGVAILVGGKMSNTGGGARLARVLRYEEIIAVVKHVIEVWRQHAKPGERLADFIDRVGWSKFLELVGLK........ 349
3 -24.300[C] COG1251 NAD(P)H-nitrite reductase  ali follow..  10  170................ETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTQE--------------VQQGNEARKTMRFADGSELEVDFIVFSKLATQCG----LAVAQRGGIVINDTCQTSDPDIYAGYKMAQVAVDHILGSENADVGGIGDAHGRTPGARSYVYLDESKEVYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELGVDKLPDSAQICSCFDVGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIEV-YSRQELFHLIKTFEELLAKHGKGYGCEVCKVGSLLASCWNEYILKPQHTPL---------------QDTNDNFLANIQKDGTYSVIPRSAGGEITPEGLVAVGRIAREFN--YTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAAKALRMAKTCVGSTWCRYGVGDSVGFGVELENRYKGI-----RTPHKMKFGVSGCTRECAEAQGKDVGIIATEKG-WNLYVCGNGGKPRHADLLAADLDRDTLIKYLDRFMMFYIRTADKLTRTAPWLDNLGIEYLKSVIIDDKLGLNEHL 779
4 -11.900[I] COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis  ali follow..  12  4............................................................................................................QHESPIKRRPSIYVGDVPIDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPTMEAAEAFKLIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIG---------------NEARIRSVVDCARDKGIPIRIGVNGGSLEK---------DLQLKYGEPTPEALVESAMRHVD---------------ILDRLNFDQFKVSVKASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSVKSAVGLGML----------LAEGIGDT-LRISLAAD------PVEEIKVGFDILKSLRIRSRGI-----NFIACPS---CSRQEFDVIGTVNALEQRLED-------VLTPMDVSIIGCVNGPGEAEVSHLGLAG-SNKKSAFYEDG--------VRQKERFDNDDLVAQLEAKIRAKAARLDEKNR............................ 367
5 -9.510[S] COG4273 Uncharacterized conserved protein  ali follow..  8  1..................................................................................................................................................................................................................................................................................................................................................................................................................MRKMVEKVDMEKLPKFLPLCHKEAENLDIIFTCSGA--ASVGKI-GHEVGVLLTKAAGSEMHLDIGRRARRVIVIDGCPMKCATKVIQKAGI----KIDYSFTI----TDFGIAKQPTLDISEEDVLKVALAIAEKVGIKLNVKS............................. 147
6 -9.050[S] COG5469 Predicted metal-binding protein  ali follow..  10  3....................................................................................................................................................................................................................................................................................................................................................................................................................................TDNSLGVAEHTLFVCK---TCASVWQDGESGGQKLLNQLQQLAQEWE-LRDKFPIQEVECMSACNRSCVVAFTGKGKLTYLF------------------GDLAVDDHASAVLECAGKYYDKAD-----GLLPWSERPEPLKKGILARIPT..... 130
7 -6.570[C] COG1146 Ferredoxin  ali follow..  11  45.................................................................................................................................................................................................................................................................................................................................................................................................................................................KCVTCGIC------FVTCGRRVFDFDKKEGKVIVARPYNCMVACQTCMNLCPTGAIS...................................................................................... 95
8 -6.570[C] COG1141 Ferredoxin  ali follow..  16  1.........................................................................................................................................................................................................................................................................................................................................................................................MADFLPSPEQEDNRSGFEPELGGFLRDAPERSGFEPELGG----ILRQKGVYVDEITCIGCKHCAHVARNT--FYIEPDYGRSRVIRQDGDAEEVIQEAIDTCPVDC............................................................................................ 101
9 -6.330[C] KOG3196 NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit  ali follow..  12  47................................................................................................................................................................................................................................................................................................................................................................................EFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQLPISAMHKVAEILQLPNMRVYEVATFYTHIQVCTTTP-C---LRGSDDILETCKKQL-GIGVGDTTKDRKFTISEVECLGACVNAPMVAIN-----------------------DDYYEDLTSKDMQDILNDLKADKISPPGPRNGRFASEPKGEPTSLSEEPKGPGFGLQAGL 242
10 -6.160[K] COG3355 Predicted transcriptional regulator  ali follow..  11  25..........................................................................................LSKSDVEVLHILLQN-------KMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKAPAEKEERKGRPNYIYWVEKERLYRLEADLEKLAGTVKEALQKHTAL.............................................................................................................................................................................................................................................................................................................................................................................................. 123
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;