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Query: [S] COG0217 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKTGLPDPTMNPRLRLAIQNAKAQSMPKDNIERAVKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFTKAGGALGETGSVSFSFDRVGEITYKLSAGDADKVMEAAIEAGADDVETDEEGHTITCGFEDIGEVSKALEGALGEAETVKAVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSNFEVSDEVLAKLSALast
1 -110.000[S] COG0217 Uncharacterized conserved protein  ali  100  1MAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKTGLPDPTMNPRLRLAIQNAKAQSMPKDNIERAVKKAAGGDAENYEEVRYEGYGPGGVAVIVEALTDNRNRTASNVRSTFTKAGGALGETGSVSFSFDRVGEITYKLSAGDADKVMEAAIEAGADDVETDEEGHTITCGFEDIGEVSKALEGALGEAETVKAVWKPQNTVPVDEEKAQSLMKLIDNLEDDDDVQNVYSNFEVSDEVLAKLSA 248
2 -89.400[S] KOG2972 Uncharacterized conserved protein  ali follow..  24  1MAGHSKWANIKHTKALKDGARAALFAKISRQIRMAIQEGNSDPAINSLLRTEIERALKQNMPSGTIQNTLNKFKA-SKVQLKKYRLDIKYKRNVYLICIFYTDNFSGVKMDATPMIKKAGGEFMDVGSLFEDFGLIETRYDTAKLQNESSLEDKATAEEIEVVDNVDGSVNFLCSPVVLTSLSRNLEKAGYTVENSEHIFSPQNVVQLSPEEQKTYDVFVEKLRNLPGLEDIYDNVEQK......... 264
3 -6.680[A] KOG2098 Predicted N6-adenine RNA methylase  ali follow..  14  1MS--DTWSSIQAHKKQLDSLRERLQRR-RKQDSGHLDLRNPEAALSPTFRSDSPVPTAPTSGGPKPSTASAVPELATDPELEKKLLHHLSDDAVSICLAISTPDAPATQDGVESLLQK.................................................................................................................................. 122
4 -6.440[S] COG3009 Uncharacterized protein conserved in bacteria  ali follow..  9  68IANNNLWAS-----PLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKR.................................................................................................................................. 180
5 -5.910[S] KOG4702 Uncharacterized conserved protein  ali follow..  27  1............................................MNKRYPRALKDKQEKKTPLGFLPWA------SQAQSVDEQVVKAMSPSCVAIAF----------VGGILKTLKKNGGALCTLGS........................................................................................................................ 68
6 -5.870[J] COG3719 Ribonuclease I  ali follow..  10  148LERY-EYA--KH--GACFGFDPNAYFGTMIRLDKAIKD--------SALGQFLTDNYGKTVSRAEFDSVVAQMWGQDN----------------VKAVKVNCHGNPAYLTEIQFSLKAS................................................................................................................................. 237
7 -5.860[S] COG1920 Uncharacterized conserved protein  ali follow..  12  1...........................MKTCAIIPVSRFT---HAKTRLSPTLSPSEREGLLKAMLMDVSGALARHVDRVLDEDVLEYAYSLGLKILEEEGERDLNGALEQAMDFCAPEFDRVIITPSDIPLIGKADVSNLLDHASRADVVIAPANGGGTNTLILRPSAMSLRFGDCSFFEHIHEARERGL-----SVSVYDSFYLSLDVNTAEDLGEIILH.......................... 191
8 -5.540[S] KOG2149 Uncharacterized conserved protein  ali follow..  10  2..SRSKAPARKQQKKGIDFKKIKR--KLGRKLPPPNNA--TNTEIKSKAIILHEQSVAAERDGFTLLELKNRTGHPNAKVRKD---------ALHGIKDLLKHHPAELLSNKYATTHKLRELITDDDK-------------LVRDDFYTLLTGIFLACKEDINKGLMVSSLMPYIFTAMTKSSIEVRLMAFKFFRLVLEFYSPTFSLYAEKILENYKDVIHN.......................... 202
9 -5.350[S] COG1739 Uncharacterized conserved protein  ali follow..  12  3....TTYKTITSSTQAEFKDKGSRFIAFAYPI-----------RTLADVKKYLDPLKEEHHKARHWCYAYRLGVDGMQFRAND---EPSGSAGRPILGQIDSVGITDVLVVVVRYF---GGTLLGVPGLIHAYKEAT---------------AQALAVAEVVEKNIEKTVWLKCEYPFLNEAIRIAKQYQADILERDLQLDCRLTVSLSLVNYEACVAAWKNTRQ....................... 193
10 -5.310[S] COG5607 Uncharacterized conserved protein  ali follow..  9  36...HDMRVSIRRMRAAAKVFEAYLDSKKLGPHLKGLK----------STLGALGDVRDLDVFREKAEGYLKKLPPEKEHDLDP-------------LFAVLAEEREKSRKNMLIYLESEK-------EFSEDLADYEFWALPATTKKHDALPHRIRDVLPSILYARFADIS--VYVERLHRLRIAAKGLRYTLEFFGEVL-------------KEVEPMIEEFKALQNHLGDLHDAVLAIDLLDNYLQ 252
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.