FFAS03 results for COG0242

Query: [J] COG0242 N-formylmethionyl-tRNA deformylase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180`
#	Score	Template	Links and tools	%id	First	`MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV`	Last
1	-102.000	`[J] COG0242 N-formylmethionyl-tRNA deformylase`	`ali`	100	1	`MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV`	183
2	-11.400	`[R] COG4740 Predicted metalloprotease`	`ali follow..`	24	55	`.............................................IKEKVTRFDEDEMIGRTLEIV---------------------YLFLNPRIIS---EEGTVYRFEKC---SRNERELVSRPYRVVVDGIRLKRLEKPLRFTGSGAYGVAHEMEHLEG......................`	158
3	-5.870	`[F] KOG3721 Mitochondrial endonuclease`	`ali follow..`	8	124	`..........PDITFPQKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSN----MSPQVGRGFN-LEMHCRRVAKKMINSYIITGPLYLPKLEGDKYQVIGDNNVAVPTHFFKVAVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGA....`	301
4	-5.800	`[R] COG0319 Predicted metal-dependent hydrolase`	`ali follow..`	17	47	`...........................................................................................EAESHALNLNYRGKDKPTNVLSFPMDLLGDL-----ICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLG---YDHIEDDEAEEMESLETEI`	139
5	-5.680	`[F] COG1864 DNA/RNA endonuclease G, NUC1`	`ali follow..`	8	150	`..............................................QAMDDTFYLSN----MCPQVGEGFN-LEYFCRGLTKKYKSVRIVTGPLYLPKKDPNYEVIGNPPSIAVPTHFFKLIVAEADIAVAAFVLPNEPISNETKLTDFEVPIDALERSTGLELLQKVPPSKKKALCKEVN..`	300
6	-5.650	`[S] COG3091 Uncharacterized protein conserved in bacteria`	`ali follow..`	13	1	`..........................................................................................MSTLRIPIALQQAVMQCLRHYLQLANQHLGTAYPEPKVNYHEIRLNPVLLLENKQPFIDEVVPHELAHL........................`	83
7	-5.380	`[S] COG5591 Uncharacterized conserved protein`	`ali follow..`	11	20	`..........................................................................................LVQLSNEFTWKISEMEIDDGCYE----------------LHVTDENGNVLKVKVDPETMKVVAGKVKR.........................`	71
8	-5.110	`[T] COG5212 Low-affinity cAMP phosphodiesterase`	`ali follow..`	8	1	`.............................................MHAALEIKEAEFQTDQVVGLVENSFTLYSLGQNGGPLESCCSSHLISD---GAFQEIISLDGGSHLSALVELIQSKHLSVDSWSSITKYDN-KAWHLSEQRIKTFLITHHLDHIYGAVIN..................`	126
9	-5.020	`[O] COG0501 Zn-dependent protease with chaperone function`	`ali follow..`	19	60	`...............................REVTPAESPNLHRIVDGLALK------ANIPKPKVYVV-----------------DSGMPNAFATGRNPQHAAVAVTTGILN---------------LLSYEEIEG-------------VLAHELAHV........................`	136
10	-4.960	`[R] COG4783 Putative Zn-dependent protease, contains TPR repeats`	`ali follow..`	11	45	`................DQEMAMGDFYVRQMRASAPLIYDPLLTQYINTLGNRLVA------NANSVRTPFHFYLVNNDQ-----------IN------------------AFAFFGGN---------VVLH----SALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQRLAPLTWVGVL`	163

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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