current user: public
If you have questions about the server, please let us know.

Query: [C] COG0633 Ferredoxin, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MRQDEWINRFVAHWLATPLTRFEEITNMPKIIVLPHETLCPEGAVLEAQTGETILDVALKNGIAIEHACEKSCACTTCHCIVREGFDSLEESDELEDDMLDKAWGLEPESRLSCQARVADEDLVVEIPKYTLNHASEDHLast
1 -69.700[C] COG0633 Ferredoxin  ali  100  1MRQDEWINRFVAHWLATPLTRFEEITNMPKIIVLPHETLCPEGAVLEAQTGETILDVALKNGIAIEHACEKSCACTTCHCIVREGFDSLEESDELEDDMLDKAWGLEPESRLSCQARVADEDLVVEIPKYTLNHASEDH 139
2 -56.400[C] KOG3309 Ferredoxin  ali follow..  34  64...........CTSSTTSSENGDEETEKITIIFVDKDG---EEIPVKVPIGMSVLEAAHENDIDLEGACEASLACSTCHVIVMDTYNKLEEPTDEENDMLDLAFGLTETSRLGCQVIARPDGVRLAIPSATRNFAVDGF 192
3 -21.200[C] COG2871 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF  ali follow..  19  1MEIILGVVMFTLIVLALTVMILFAKSKLVNTGDITVEINEDEDKSFTAPAGDKLLNMLSSHGIFVSSACGGGGSCGQCRVTIKEGGGDILPTELSHIS----KREAKEGCRLACQVNVKQN-LKIELPEEI........ 126
4 -15.900[C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1  ali follow..  30  231......................................LARSCVTFKVPAGRTILDVMREVGIDMPSSCE-QGACGTCLATVIEG------EPDHQDVYLNDAERKSGTKIMTCVSRAKSARLVLDL............ 312
5 -14.100[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  18  2..........................LMATIHV--------DGKEYEVNGADNLLEACLSLGLDIPYFCGSVGACRQCAVKQYQNAED------------------RGRLVMSCMTPAS-DGTFISIDDEEAKQFRES. 92
6 -13.100[C] KOG2282 NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit  ali follow..  16  7...RKALVGLSKSPKGCVRTTATAASNLIEVFV--------DGQSVMVEPGTTVLQACEKVGMQIPRFCSVAGNCRMCLVEIEK----------------------APKVVAACAMPVM-KGWNILTNSEKSKKAREG. 115
7 -11.600[R] COG3383 Uncharacterized anaerobic dehydrogenase  ali follow..  18  2.........................GAKVSVRI--------NGEARDVVEGTRILDYLNAEGIQHPHICGPIQSCDTCMCEVDGELMR------------------------ACSTNLT-DGMEIKTNSELAKDAQLE. 86
8 -8.080[C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs  ali follow..  17  67......................................VNGKTEQLEVDTRTTLLDALREN-LHLIGTCD-HGQCGACTVLVNGRRLNLTLAVMHQGAEITTIEGLGSPDNLGFQCGYCTSGQICSS............ 169
9 -7.270[O] COG1331 Highly conserved protein containing a thioredoxin domain  ali follow..  12  31..................................................SPASLEEARTLDRPILLSV-GYAACHWCHVMAHESFENDGVAAVMNRLFVNIKVDREERPDIALSSMGEQGGLTMFLTPDGKPFWGGTY 126
10 -6.940[O] KOG2358 NifU-like domain-containing proteins  ali follow..  13  188......................DDSETVAMIKELLETRIRP---AVQDDGGDEYCGFDPESGLRMQGACSG---CPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGEDEE............................. 273
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.