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Query: [K] COG0640 Predicted transcriptional regulators, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNEITMQTQADQPKVSSNLAILSEARLVDSIQMGREKIYRIAPEKFEDMVDWLDSILHSKSSGGSANYGLSPVNDLNYARTCYDHLAGEMGVYLLEELLKRKWIILDDPEKPTYRLTTAGAEELTVRGVSLPPRANGKRMFAYGCKDWTVKRFHLGGFLGSSILKVLEARGYVERIEGSRILKVKIELSKFFGLast
1 -101.000[K] COG0640 Predicted transcriptional regulators  ali  100  1MNEITMQTQADQPKVSSNLAILSEARLVDSIQMGREKIYRIAPEKFEDMVDWLDSILHSKSSGGSANYGLSPVNDLNYARTCYDHLAGEMGVYLLEELLKRKWIILDDPEKPTYRLTTAGAEELTVRGVSLPPRANGKRMFAYGCKDWTVKRFHLGGFLGSSILKVLEARGYVERIEGSRILKVKIELSKFFG 193
2 -19.800[K] COG1497 Predicted transcriptional regulator  ali follow..  17  28QKDIADKLGVTVQAVSENIKSLIAEGLV--ESGSGRSHYKITRRGAEKIKEAAMDLRR....................................................................................................................................... 83
3 -19.600[K] COG4190 Predicted transcriptional regulator  ali follow..  15  86INETARVVDRDVKNVHEELSRLAHLGIIFFEEDGQRKRPVVWFDELVINLP.............................................................................................................................................. 136
4 -19.200[K] COG1777 Predicted transcriptional regulators  ali follow..  12  32ALELSRSIGLSQQAILKQLEMLERANLVTSIGFVPSSVGAKRKEPTGFSTLIVDYGRNFLMIQRIPLENDSERVSVSFDEA--------------ISKLESIQHHIEELTKKRTELVKKKDELMAAIKYQLEDEDPITREIVLEYLNTFDVE-EVSRRTALEIVLKILKSKGIVLDEGTRA............ 201
5 -18.400[S] COG3398 Uncharacterized protein conserved in archaea  ali follow..  21  203NLALAREIGVSRATISWYVKNLKETGLIDETRSGRSIIYSINPSYEPLIEKY............................................................................................................................................. 254
6 -17.600[S] COG4860 Uncharacterized protein conserved in archaea  ali follow..  15  40LPVIEQKYG---KEGRRALLYLDKIKMIETQQNGPEKAYHTYYTNVQINIM.............................................................................................................................................. 91
7 -16.800[K] COG3432 Predicted transcriptional regulator  ali follow..  12  53ITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITETHIEEFIKIRENLYSAKEKVSELLRTDSE......................................................................................................................... 130
8 -16.600[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  12  26MRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKGTLVELTEKGINLLEKLYEEI......................................................................................................................................... 81
9 -15.000[K] COG4189 Predicted transcriptional regulator  ali follow..  22  40VNEIAQRLALPQSTVSAGVAVLEEAGLLRTETRARKGSQKICFATCDELIVSFRKPE........................................................................................................................................ 97
10 -14.000[K] COG2345 Predicted transcriptional regulator  ali follow..  15  33ASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPGRAKTYRLTDKGAAAALATLREVGGDDAVRQFARKRIETIVEGITPADVTDQSIEDTAKSLVEAFSRHGYAATVDATRNGLQLCQHH------------PISTVATEFPELC---EAEHQAVSELLGQHT.............................. 203
11 -13.500[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  25  36LSEISRAVKSDPSNVKGCLESLIGLGLVIVEQSKNGKYFKINPEI-VEEVRNMKN.......................................................................................................................................... 100
12 -13.300[K] COG1510 Predicted transcriptional regulators  ali follow..  12  49LSELSEATGMSKTRMSQVVREMIDANIAEVFEKGRKDLYDVEQDYYQTFISLFAA.......................................................................................................................................... 105
13 -13.100[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  11  39IREIQRELGISERSVRTHVLNLYRRGLLKVQSGWLGYIYTPVSPLLQKIKEHLMKSIEELERDLKNQTRS........................................................................................................................... 113
14 -12.100[K] COG3327 Phenylacetic acid-responsive transcriptional repressor  ali follow..  12  43LAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPA.................................................................................................................................. 105
15 -11.600[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  17  35IIKLSQETGIPEHKIRYSLRILEQENIISPSREG............................................................................................................................................................... 68
16 -11.500[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  19  32AKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTHHTYYQINKKAEAVLKEITPKLY........................................................................................................................................ 105
17 -11.500[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  25  267.KDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEE.................................................................................................................................................... 310
18 -11.400[K] COG4742 Predicted transcriptional regulator  ali follow..  17  29MEDIKVLLDVSPTAILPQIKRLTDSNLVIQKNGS----YELTDKKARALVDVLTLVEK....................................................................................................................................... 88
19 -11.400[K] COG3355 Predicted transcriptional regulator  ali follow..  16  44TDDLSQKLNVTKASISKALNNLLDKGLIQREKAPAEK............................................................................................................................................................ 80
20 -11.400[K] COG1695 Predicted transcriptional regulators  ali follow..  18  23SKEISTGVQVSHGTLMPMIRKLLQERYIDFETRGREKVYHLTERGSRFVESLGKIEED....................................................................................................................................... 80
21 -10.900[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  25VPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDGRRYYQLSDERKKDIAASLGFCA........................................................................................................................................ 95
22 -10.700[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  11  101LADICLALDIETHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKTLSELAALLRFMSGAFNQATRSAIT............................................................................................................................ 198
23 -10.600[T] KOG4603 TBP-1 interacting protein  ali follow..  10  33FGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATN--HVTPEEKEQVYRERQKYCKEWRKRKRMATELSD-PKSKKQFFEEVG................................. 203
24 -10.500[K] COG1846 Transcriptional regulators  ali follow..  18  59MKELAERLGVTKGAVSQLVDRLEAKALVRRTAKGREAY-SFTKEEIAIFEQCVSKLRD....................................................................................................................................... 145
25 -10.200[K] COG1959 Predicted transcriptional regulator  ali follow..  19  28ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVR-GKNGGIRLGKPAIGDVVRELEPLS........................................................................................................................................ 87
26 -10.200[DR] COG5124 Protein predicted to be involved in meiotic recombination  ali follow..  31LESLGSKKGIVVNTIKEILQQLVDDGLVTAEKVGTSNLYQKKKLRCKELMEECERMSQDICRKREYIENEKMSKHYTEERN................................................................................................................ 119
27 -10.200[DR] KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein  ali follow..  31LESLGSKKGIVVNTIKEILQQLVDDGLVTAEKVGTSNLYQKKKLRCKELMEECERMSQDICRKREYIENEKMSKHYTEERN................................................................................................................ 119
28 -10.000[R] COG1672 Predicted ATPase (AAA+ superfamily)  ali follow..  11  255LGEIMNETGLSRATVAKYLSVLIELDFVKASRKSRRGRYYIKDNYFAFWFRYIH-------PNIDFIESERRKELLELIIDDLPNYLGGIFENVAIEFLPL-------SNKLPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILKDLNRKSKILKM--KEWEQYHGIIAKRV..... 433
29 -10.000[K] COG1675 Transcription initiation factor IIE, alpha subunit  ali follow..  18  41..QLSLELGIEINEIRKALFALYEIGLADYVRRRDDEYWRINYDKALDVLK.............................................................................................................................................. 95
30 -9.910[K] COG4738 Predicted transcriptional regulator  ali follow..  25  53SQRIEMVSGLRQPEVSIAMRYLRENEWVDMREKGRPVKLYKLTVQMETIIDTIEE.......................................................................................................................................... 113
31 -9.770[K] COG1654 Biotin operon repressor  ali follow..  24..QLGERLGMSRAAINKHIQTLRDWGVDVFTVPGK---YSLPEP..................................................................................................................................................... 63
32 -9.640[K] COG2188 Transcriptional regulators  ali follow..  13  39..ELVASLGVSRMTVHRALRELTAAGFLI-RLQGVGTF--IAPPRPQSTLIEINNIAAEIVERGNRHRSEVLVLETIMPT---KELALSFEFPKRVAIYHSVVVNFENDL................................................................................... 140
33 -9.030[K] COG1725 Predicted transcriptional regulators  ali follow..  14  37VREMGVKLAVNPNTVSRAYQELERAGYIYAKR-GMGSFVTSDKALFDQLKKELAD.......................................................................................................................................... 90

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.