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Query: [G] COG0698 Ribose 5-phosphate isomerase RpiB, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIALGADHGGYELKEKIKQHLAKKEGIEVIDFGTNSTESVDYPKYGHLVAKSVVDKEVDFGILVCGTGIGISIAANKIKGIRAANCTNTTMAKLTREHNNANILALGARIVGDVLALDIVDEFLSASFEGGRHQKRVDQIEVEECNLFLast
1 -92.800[G] COG0698 Ribose 5-phosphate isomerase RpiB  ali  100  1MKIALGADHGGYELKEKIKQHLAKKEGIEVIDFGTNSTESVDYPKYGHLVAKSVVDKEVDFGILVCGTGIGISIAANKIKGIRAANCTNTTMAKLTREHNNANILALGARIVGDVLALDIVDEFLSASFEGGRHQKRVDQIEVEECNLF 149
2 -7.420[G] COG3414 Phosphotransferase system, galactitol-specific IIB component  ali follow..  16  6..............................................................LAVCGNGQGSSIMKMKVDQF-DHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYV-VRNMLSPADFGPKLLEVIK...... 93
3 -7.280[F] COG0283 Cytidylate kinase  ali follow..  18  4.QKVIAIDGPGASGKGTVAARVAAALGYDYLDTGAKQGVGWHDEENVSELAKKLPAVFSDSRILLGGEDVSDGIRTEAIGMGASAVVRASLLQRQRDFLTEKGLVADGRDTGSVVFPQAELKIFLTAESK-IRAERRAKQIGI...... 159
4 -7.150[G] COG1440 Phosphotransferase system cellobiose-specific component IIB  ali follow..  20  5..............................................................LLICGSGASSGFMAAAIRKAAKKRGEKVTVKAASESQNEIDYLLIGPHL...................................... 58
5 -7.110[R] COG5362 Phage-related terminase  ali follow..  15  12.KSAQSWDMAFKDTKKSGHVWNRKKADFFFIDR---IHDRMGLPETLNAVRRLTIKHPLAIAKYIEEKANGPAVMQTLKGEITGMIGVEPEGGKETRAYAVTPLFESGNVYFPHPLYAPWISDVIELAFPNGEHDDDVDAMT....... 155
6 -6.820[J] COG2263 Predicted RNA methylase  ali follow..  16  1.............MKQRKLEMLLEEVEGFSSPELELEQYQTPSPLAAEILHFAYMQGDLDESVQDLGCGTGILAIGAKLLGARKVVGYDTDPKALEVARKNAERLGVEVEFVCSDI................................. 103
7 -6.480[T] KOG0703 Predicted GTPase-activating protein  ali follow..  19  16..............RKILEGLLKHPENRECADCKTKG------PRWA----------SVNLGIFIC-SGIGVHI--SKVRSATL---WLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR............ 125
8 -6.170[R] KOG1541 Predicted protein carboxyl methylase  ali follow..  15  34............KMTLRALELLNLQPCSFILDIG-------------------------------CGSGLSGEILTQEGDHVWCGLDISPSMLATGLSRELEGDLMLQDMGTGIPFRAGSFDAAISI...................... 117
9 -6.170[U] KOG3325 Membrane coat complex Retromer, subunit VPS29/PEP11  ali follow..  15  5RLVLVLGDHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLVVTVGQFKIGLI----HGHQVIPWGDMASLALLQRQFDVDILISG......................................... 118
10 -6.110[S] COG4634 Uncharacterized protein conserved in bacteria  ali follow..  20  1MNIWVDAQ-----LPPTLADWLSSNFDLELRDLGLRDARDIEIFDAARVANSVIMTKDSDFVDLVCRLGIPPQIIWLTCGNVTNRNLRRILSSTLPQ.................................................... 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.