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Query: [E] COG0786 Na+/glutamate symporter, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNQIISIGALESFLIAISVLFLGHFINAKLPILTKFNIPEPIVGGLIVACVITALHFHGIDMEFSLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIIQNGVGVSLAAGLGLDPLLGLIAGSITLSGGHGTGAAWANTFAENYGLANTLEIAMASATFGLIIGGIIGSPVAQKLVDKHGIESEYGRGTQTHSRFPELVTYNEYEEDKVTAKKVIEILFILLICVTGAKYLEAWVKTFEIRWLMIPDFVYALFIGVFITNLLEVTKLRKVDAETVDILGTVSLSLFLAMALMSLKLWNIFDLALPFLVILAIQSVVLGVFCYFVTFKVMGANYDAAVISAGHCGFGLGATPTAVMNMGSVVKRFGPSPQAFMVVPIVGAFFIDIVNLIILQGYISFLGLast
1 -105.000[E] COG0786 Na+/glutamate symporter  ali  100  1MNQIISIGALESFLIAISVLFLGHFINAKLPILTKFNIPEPIVGGLIVACVITALHFHGIDMEFSLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIIQNGVGVSLAAGLGLDPLLGLIAGSITLSGGHGTGAAWANTFAENYGLANTLEIAMASATFGLIIGGIIGSPVAQKLVDKHGIESEYGRGTQTHSRFPELVTYNEYEEDKVTAKKVIEILFILLICVTGAKYLEAWVKTFEIRWLMIPDFVYALFIGVFITNLLEVTKLRKVDAETVDILGTVSLSLFLAMALMSLKLWNIFDLALPFLVILAIQSVVLGVFCYFVTFKVMGANYDAAVISAGHCGFGLGATPTAVMNMGSVVKRFGPSPQAFMVVPIVGAFFIDIVNLIILQGYISFLG 408
2 -13.100[C] COG3493 Na+/citrate symporter  ali follow..  15  43FYNAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGAS---LFGIVIGLCFGIPVDRIMMLYVLPIMGGNGAGAVLSEIYHSVTGRSREEYYSIAILTIANIFAIIFAALLDMIGKKYTWLSGEGE-----LVRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSI-GGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGD-LEVLSA-CNRMNLISYAQISSRLGGGIVL-VIASIVFSMMV.... 446
3 -11.500[P] KOG4505 Na+/H+ antiporter  ali follow..  10  10.......KPHLAYAIIGGFTSLFMLCSLIIK--EKLFLGEATMATATGLIFGPYVTSWGNTDYITEELARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWL--VSTGFMYALIRLSFLESLAIAACSIVGKGKFARRVPGHLRNMLLAESGCNDGMAIPFLGCVLGAIIG--IARKMIKFSERRGLMDRESF-----------------------LVFYFVLALFCGGIGTIIGV--------------LLVSFCAGAAFSWDSWFSKKTEESHNVIDLLLNLSFFVYVGAIMPQFHMPHMDLSVWRLVVLAICILIARRIPAVLLFKSFVPDIINREALFAGHFG-GVGALYTCLVARAELEVHSTVPEPNDAIENPEIPNWYCIQVMWPVVCFLVLSS 423
4 -10.600[P] KOG3826 Na+/H+ antiporter  ali follow..  12  68............IFVIFILLVAGIFAAK---ISKALRLPP-LALGIIIKNITVFDQFFVFPPFVETMIRKVALVMIIVRWGLATDIHFLYENALMPVTIGLVTAIGEII--AVTIASYFILNISFVMSIFCALILVT-QLGSLKRIPENILAICCVDNLFCVNAGSIVFGCIGGIVLGWILWRFPRSDAPHTQFAR----------------------------ITLLGTICIAVVIGTYLI---------KYSCSGFLAALITSAMSAMQWKADNLECVESTYKYIWDSFALPLLFICLGMKFDCSTLTWEIVFLCIAVIAIGLLVRTILVMLVTLSSHINFKEQIVV-ALSLLPRATFQADLAPTLLLMATPFPDMAKDAALILKAAILSVLITAPIFDILLNLVG 463
5 -9.700[R] COG3180 Putative ammonia monooxygenase  ali follow..  12  23.........VWQWCLLALLSAVFAGVLEMIG------IPAGLLMG---MIAGALVGMNGGTIRLPRQLFFCVQVVLAMMIAASMSPDLLVTFSGNWLLFLAIILSVIGVSTLCGWTITRMGILPGTTAIWGSS----GAASTMLLMADAYGAD------ARLVAFMQYLRVVFVASTATIVSHLWVSGVEAETATHWFAPIA----------------------GLPFFMTLAVGIASGILGKILR--------VPA--GAFLVPFAIGSALNITGTLTIELPQLLALSFAMLGWNIGLGFTRAILAHARRALMPTIVSIVVLISFSGLLALLLI-KVAGIDPLTAY---------LATSPGGLDSIAVIAASSNVDLPFVMALQTARLLIITLIGPALARFVAD... 360
6 -9.620[R] KOG4821 Predicted Na+-dependent cotransporter  ali follow..  11.......................IWAHSVTEFLKSQWFFICLAILIVIARFAPNFARDGGLIKGQYSIGYGCVAWIFLQSGLGMKSRSLMANMLNWRAHATILVLSFLITSSIVYGFCCAVKAANDPKIVLIGLILTATCPTTVASNVIMTTNAG--GNSLLCVCEVFIGNLLGAFITPALVQMFTNR--------------APFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTAYYLGIGSYMLLLIMFSSFSTAFYQDAFTSVSHVCIIFLCFFNLGIYIFFTGLSYLCARPWFILKLFPHEPIEGKSTRLYRYSYNIFRPFYEDAICIMFCGPAKTAALGVS------LITSQYGDKKEHLGKLLVPLVLYQVEQVMTANFFVSLFK... 384
7 -9.460[S] COG5505 Predicted integral membrane protein  ali follow..  12  1MHSLIS-DVWVLWGFIAVWAAVSIGLEQRFKWASA--VSGAIIALAGAMVFTNV--VLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFGEYVSATVVADNFMMALLFFILISI----------KWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERNGSQELGTFLIYLFFVVIGIPADLRLIVTNA-PLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAV-----TVGGPTTAAAMAIAKGWR--------MLVGTLGYLIGNYVGTFMGNWFSSFL. 396
8 -7.210[R] COG1380 Putative effector of murein hydrolase LrgA  ali follow..  19  9......WQYIRAFVLIYACLYAGIFLASLLPI-----IPGSIIGMLILFVLLALQILPAKWVNPGCYVLIRYMALLFIGVGVMQYFDLLRAQFGPVVVSCAISTLVVFV........................................................................................................................................................................................................................................................................................................... 109
9 -7.160[P] COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain  ali follow..  12  22...................................................................VSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSG--LTGMMAAWLFNLDLIEGLLIGAISLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQGIVIGGYLLLQMINRIALPA-------------------------------GLYPLLALSGGILIFSLTTALEGS---------ILAVYLCGFLLGNRIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGL-----GAVPIILAVFPMMAG---ENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAK 349
10 -6.410[R] COG0385 Predicted Na+-dependent transporter  ali follow..  11  1.............................MRFLPDKFT----TMLIATILFASVLPVRGEFAVWFALATKIAVGLLFFLHGARLSREAVIAGITHWKLHVTVLASTFVLFPILGLAAGWAIPGLSQSPFYTG-ILYLCVLPSTVQSSIAFTSMAR--GNVSAAVVSASASNIFGMFLTPLLVGLLFA--------------------------IKGGGGISMDALESILLQLL---------------------AP-----FVLGQVLQPFIG--NFVRRKARVLAVVDRGSILMVVYLAFSEGLWRTVSWDDLGMMVGVNILLLAVVLLATWYGSKWLGPDRITIMFCGSKKSLASG--------ALMANAIFAGANVGNIVLPLMLFHQIQLMACAIIARKLA... 314

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.