current user: public |
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Query: [E] COG0831 Urea amidohydrolase (urease) gamma subunit, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 | |||||||
# | Score | Template | Links and tools | %id | First | MQLTPQEKDKLLIFTAALVAERRKNRGLKLNYPEAVAYISAAILEGARDGNTVSELMSYGTTLLTRDDVMEGIAEMVHEVQVEATFPDGTKLVTVHNPIR | Last |
1 | -71.500 | [E] COG0831 Urea amidohydrolase (urease) gamma subunit | ali | 100 | 1 | MQLTPQEKDKLLIFTAALVAERRKNRGLKLNYPEAVAYISAAILEGARDGNTVSELMSYGTTLLTRDDVMEGIAEMVHEVQVEATFPDGTKLVTVHNPIR | 100 |
2 | -6.530 | [E] COG1446 Asparaginase | ali follow.. | 16 | 12 | ...............AGAIARAQMSHEQELRYIQALSEIVESGQKMLEAGDSALDVVTEAVRLLEACPLFNAVYTRDGTHELDACVMDGNTVSHVRHPVL | 108 |
3 | -5.060 | [A] KOG1784 Small Nuclear ribonucleoprotein splicing factor | ali follow.. | 13 | 19 | ..................TNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIG.............................. | 70 |
4 | -4.830 | [S] COG3018 Uncharacterized protein conserved in bacteria | ali follow.. | 14 | 113 | ........................SQALALAKRAAIVDGYRQLGEKMY-GIRVNAQDTVKDMVLQNSVIKTRVNALIRNAEIETIYKDGLCQVSMELKLD | 188 |
5 | -4.680 | [S] KOG4502 Predicted membrane protein | ali follow.. | 12 | 579 | .......MEFFVIIPFIPIEYLRINWGSRGNLLESTAFLALSTVLSIPIIIILVYLEFFQNYVLFIEEIFTYVMGFFVILET.................. | 653 |
6 | -4.610 | [E] KOG1592 Asparaginase | ali follow.. | 15 | 44 | ..........VLVHAGAGYHSESKAKEYK----HVCKRACQKAIEKLQAGALATDAVTAALVELEDSPFTNSNLNLLGEIECDASIMDGKSLSGIKNPVS | 141 |
7 | -4.370 | [C] COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit | ali follow.. | 27 | 55 | IQAENHDLERLRPVIVAAIAHHRRQQGLK....................................................................... | 83 |
8 | -4.310 | [S] COG2105 Uncharacterized conserved protein | ali follow.. | 8 | 9 | ..LRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGAVPG-------NGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSA........... | 88 |
9 | -4.290 | [D] KOG3431 Apoptosis-related protein/predicted DNA-binding protein | ali follow.. | 21 | 29 | .....TAKNGMISQILDQAAMQRLSN-LAVAKPEKAQMVEAALINMARRGQLSGKMTD.......................................... | 80 |
10 | -4.260 | [KB] KOG4161 Methyl-CpG binding transcription regulators | ali follow.. | 14 | 148 | VEVNETEQTLLVRFERNH--KLKVSPSTSGSFQEWMAIKSERLRQRLSN--RVLPVFELDEKCMARPRKFPGIRKLLGNDTYEVLFDDGYVKNVRAVHMN | 247 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review. |