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Query: [C] COG1017 Hemoglobin-like flavoprotein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGTHLLATLDEMFNPGQEVLDAWGKAYGVLANVFIHREAEIYHENASKDGGWLast
1 -73.500[C] COG1017 Hemoglobin-like flavoprotein  ali  100  1MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGTHLLATLDEMFNPGQEVLDAWGKAYGVLANVFIHREAEIYHENASKDGGW 149
2 -15.400[C] KOG3378 Globins and related hemoproteins  ali follow..  9  259.ITERQKHIFTETFPVIFKEYKRNGLVLFAKYFSEFPHYKNIWPQASNELANHCSVYMSGLKV...................................................................................... 330
3 -13.300[R] COG2346 Truncated hemoglobins  ali follow..  15  33.................DATVRALTRRFYELM-DTLPEAARCRAIHPADLSGSEAKFYDYLTGYLGGPPVYVE-KHGHPMLRRRHFVAPIGPAERDEWLLCFRRAMDE-TIENAKLREIIWAPVERLAFHMQNQEAD............ 149
4 -6.510[O] COG5536 Protein prenyltransferase, alpha subunit  ali follow..  12  61........................ALNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAEDLSLTKNYERELEFTKKMFEIDSKNYHV--SQELKLTNELLEKDIYNNSAWNHRFYVLFET-LNYLKDKILFAPDNQSAW 221
5 -6.450[NUO] COG1516 Flagellin-specific chaperone FliS  ali follow..  15  1MQYANAYQAYQHN-RVSVESPAKLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGKVAVYLTG-----------YTHQIKVLTQAIDLVLNVARGLLEAWREI.......................... 120
6 -6.170[A] KOG4353 RNA export factor NXT1  ali follow..  8  1MASVDFKTYVDQACRA----AEEFVNVYYTTMDKRRRLLSRLYMGT------------ATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQ.................... 118
7 -6.030[U] COG5538 Preprotein translocase subunit Sec66  ali follow..  9  73.................................DLYFQIKEMSENEKIHEKVLKAALLNRGAESVRRSLKLKELAPQINLLYKNGSIGEDYWKRFETEVKLIELEFKDTLQEAERLQPGWVQLFVMVCKEICFNQALSRRYQSILK... 185
8 -6.030[U] KOG4699 Preprotein translocase subunit Sec66  ali follow..  9  73.................................DLYFQIKEMSENEKIHEKVLKAALLNRGAESVRRSLKLKELAPQINLLYKNGSIGEDYWKRFETEVKLIELEFKDTLQEAERLQPGWVQLFVMVCKEICFNQALSRRYQSILK... 185
9 -5.980[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  8  1.........MALESNAPVVDPNTIGNSFYYNLLYKSPSQVHQFYLDDSVLGRPGSD------GEMVSVKSLKAINEQIMSFDYEISKIQILTDSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPL.................... 118
10 -5.520[P] COG3546 Mn-containing catalase  ali follow..  8  18..NPGLANLLLEQFGGPQGELAAACRYFTQGLSDDDAGRREMLMDIATEELSHLEIIGSLVGMLNKGAKGELAEGTENEAELYRSLTQNGNDSHITSLLYGGGPALTNSGG------VPWTAAYDTIGEVTADLRSNIAAEARA..... 154
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.