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Query: [C] COG1029 Formylmethanofuran dehydrogenase subunit B, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPVIKDAVCSLCGSLCDDITVTVEDNKITKIENACILGHSKFVGMFEHDRIETPMIRKDGELVPVSYEEAIEAAAKILVNSRRILSYGWCSTSCEAVSGAIELAEETGSVIDSTANVCHGPSALAAQEKGSPSASLGEIKNRADVIVFWGCNPVHAHPRHMSRYSSFSKGFFTEKGRKGRTMVVIDVRKTDTAKLADNYVEIEQGSDLLLITALRSIVNGHEDVVPETVAGVPKAEVLELAETLKNAKFVCIFFGMGVTQSRSKYKNGDAVSSLISDLNQHTKAVMIGMRGHYNVTGFGQVATWETGFPMAIDFARGYPYYNPGETGANDLLVREEPDAAIIAAADPGAHFPQKAVRHLAKIPVIQIDPYANPTTEIADVVIPSAIVGIEAEGTAYRMDAISLRMKKLIDTRFKTDEEIVKDLTAKVRELKRGALast
1 -117.000[C] COG1029 Formylmethanofuran dehydrogenase subunit B  ali  100  1MPVIKDAVCSLCGSLCDDITVTVEDNKITKIENACILGHSKFVGMFEHDRIETPMIRKDGELVPVSYEEAIEAAAKILVNSRRILSYGWCSTSCEAVSGAIELAEETGSVIDSTANVCHGPSALAAQEKGSPSASLGEIKNRADVIVFWGCNPVHAHPRHMSRYSSFSKGFFTEKGRKGRTMVVIDVRKTDTAKLADNYVEIEQGSDLLLITALRSIVNGHEDVVPETVAGVPKAEVLELAETLKNAKFVCIFFGMGVTQSRSKYKNGDAVSSLISDLNQHTKAVMIGMRGHYNVTGFGQVATWETGFPMAIDFARGYPYYNPGETGANDLLVREEPDAAIIAAADPGAHFPQKAVRHLAKIPVIQIDPYANPTTEIADVVIPSAIVGIEAEGTAYRMDAISLRMKKLIDTRFKTDEEIVKDLTAKVRELKRGA 434
2 -67.800[R] COG3383 Uncharacterized anaerobic dehydrogenase  ali follow..  22  258.TKKTKTVCTFCGVGCT-FEVWTKDRKILKVFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWEDAIHLVATKLREIQAKISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGIGADSGEDIESAGLVIIVGASPADGHPVLASRIK-------RAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYIEPFTLEYAEKETGLPAETLKLVAEMIHEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGND-PEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNHVQEILSSLDFFVVDVFLSKTAQFADVVFPAAPSL-EKEGTFTNTERRVQRLYEVLEPDSKPDWWIIQEVARACGRTD... 744
3 -57.900[C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing  ali follow..  15  56.EKAVWSSCTVCGSRCL-LRLHVKDDTVYWVVRACLRGRSIRRRMNHPDRLKYPMKRVEGKFERISWDEALDTIGDNLKRILKDYGTGVDGGNITNSNVPYRLMNACGGYLSRYGSYSTAQISAAMSYMGGNDGNSPDDIANTKLVVMFGNNPAETRMSGGGVTYY----VEQARERSNARMIVIDPRYNDTAAREDEWLPIRPGTDGALAAAIAWVLIAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTARAIAMLSVLTGNVGINGGNSGVREGTWMLENPVKTQISVFTWTDAIDHGAEMTATRDGVRGKDKLDVPIKFLWCYASNTLINQHHEVLQDDSKCEIVGIEHFMTASAKYCDILLPDLMP-TEQEDLISHEMGYVILGQPATSPERKPIYWTLSEVAKRLGPDV... 574
4 -48.800[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  15  224..QFAPSICQQCSIGCN-ISPGERYGELRRIENLCDRGRFGYGYVNLKDRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGSPRASVESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGGIYTPALREI-ESYDAVLVLGEDVTQTGARVALAV--------RQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLLDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAG----SLEVIQAAANVAKALKGRGAVGITMIARSVNSMGLGIMGGGSL-------------------EEALTELETGRADAVVVLENDLHRHASTRVNAALAKAPVMVVDHQRTAIMENAHLVLSAASFA-ESDGTVINNEGRAQRFFQVYDPVMLESWRWLHSLHSTLL...... 662
5 -40.100[C] COG5013 Nitrate reductase alpha subunit  ali follow..  18  44.KIVRSTHGVNCTGSCS-WKIYVKNGLITWETQGCPRGASYSWYIYSANRLKYPKVRKLGGFVRSSWDEVTEIIAAANVYTAKTYGPDRVMSMVSYAAGARYLSLIGGVCLSFYDWYCDLPPASPQIWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAH--------FFTEVRYKGTKTVSITPDYSEVAKLTDLWLNPKQGTDAALGMAFGHVITPYTPAWQERITGVPAARATQVAREFADSGKAMVIIGAAMNHWYHMDMNYRAVINMLMMCGCIGQSGGAHYVGQEKLRPQTGWAPLAFGLDERLGWLPSAPQLNRNPLRIAAEAEANGVMNDDLGKAGGPRPTEVDDDGAEGKLDLVTLDFRMSSTCMYSDIVLPTATWYEKDDLNTSDMHPFIHPLSAATDPEAKSDWEIYKAIAKKFSAVAE.. 842
6 -32.200[C] KOG2282 NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit  ali follow..  14  246..RKTESIDVMDAVGSN-IVVSTRTGEVMRILPISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQSFQGKIAGGLVDAEALVALKDLLNRVDSDTLCTEEVF--TAGAGTDLRSNYLLNTTIAGV-EEADVVLLVGTNPRFEAPLFNARI--------RKSWLHNDLKVALIGSPVDLTYTYDHLG------------------------DSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGKVMNILHRIASQVAALDLGY----------------------KPGVEAIRKNPPKVLFLLGADGG----CITRQDLPKDCFIIYGHHGDVGAPIADVILPGAAY-TEKSATYVNTEGRAQQTKVAVTPLAREDWKIIRALSEIAGM..... 632
7 -13.200[S] COG3862 Uncharacterized protein with conserved CXXC pairs  ali follow..  14  1..MEKEMICIVCPVGCH---ISVNTETYEVKGNSCPRGEVGKEELTAPKRVVTSTVKKNALDKRCPVKTEKSIPKELNFKLMDELKNIELIAPVKRGDIVIKNVFNTGVDVVVTKDM............................................................................................................................................................................................................................................................................................................................. 114
8 -7.390[K] COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains  ali follow..  12  3........CPFCAAVDTKVSRLVSDGSQVRRRRQCLDCNERFTTFEVAELVLPRVIKSDEVREPFNEEDDVETAISHIKSQLRATGEREVPTKMVGNLVMEALKR-----LDKVAYIRFASVYRSFEDVREFGEEIARLQD..................................................................................................................................................................................................................................................................................................... 149
9 -7.080[O] KOG0824 Predicted E3 ubiquitin ligase  ali follow..  7  16INSTIDKECAVC--SCG--------------HKFC---FICLKGVSVSNNGDCPICRGPIDSQIFKKPLQAVDLKMDIPGTPSAAAPDPVVKQEVDDEDVKPDVKKLQEELKKQQAAAAAQKMFWLYRGRHQG---------------------------WWRFDPRIEKEIEEAFTHQMPMTEVTICGNPYIVDFSQMCQYPKNQSNYSRNVKRVNSTDFDSLNVKGMSGVFVATTSPPAAA............................................................................................................................................................................................... 223
10 -6.470[K] KOG2857 Predicted MYND Zn-finger protein/hormone receptor interactor  ali follow..  8  1MCPRATQTCEICE--CLVPYCSLG----------CFKIHKVCNLINNAETPCAKPSDPSSTEEKPVVQCEPWFESCSGFVAASPAKEVPVKRPEEANDVVEKTQQKASASSSEIREALKDEPLQKLIYSIDSSSNPLQELDEADKIL-------SNISKSNDEQGISTMDIGKELPAMEEEEIVASDGDQQTDHKDSSEVGSTPG..................................................................................................................................................................................................................................... 206
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.