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Query: [C] COG1032 Fe-S oxidoreductase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTRFVLVSDTTLSYEYRHFPLLDFLPCAPGKAIPGPIYRFLKGPEPPNVNGIVKYAPYAIRKIEASLVRAFGRDSVVVVDEDYLGQYVDDKTEVIGVSTMDPLGLGPTTMSYYALFGGDLDAWVRREWDSLMEKVNKAREGKKAKLIVGGPGVWEFTILRDEIDKYKVDYYVQGETDDVVAELFRQVAEDNIDKQMFFNGYMSYDENFHKVLKKDEKFLARGITQSAYPRLEDIPEIINPSMKGMVEVMRGCGVGCDFCEVTLRPLRYMPLNMIVDEIKINVAGGVDNAWLHSDEIFGYKHGHFFEPNEEALSELFSTVMSVPGVKTSNPTHGRISIPAGYPEMMEKLSKILKAGPRNWIGIQTGLETGSEELAKKHMPNKTLPLRIGVDGSWQDIVWQGVFVETRNYWRSAFTIQVGQEGETPEDLWETIALINKLSNSYVDGRPFEFTVTPLVNVPLGRIKSKKLNTSMLDVNGLAVYYASYRHLAKMAARDGFRDAHGNAFLKLATGGLISFGGRLMMDFIEKKAQKAGVDIDKVKRYGIESTDEITSLAQFARALast
1 -130.000[C] COG1032 Fe-S oxidoreductase  ali  100  1MTRFVLVSDTTLSYEYRHFPLLDFLPCAPGKAIPGPIYRFLKGPEPPNVNGIVKYAPYAIRKIEASLVRAFGRDSVVVVDEDYLGQYVDDKTEVIGVSTMDPLGLGPTTMSYYALFGGDLDAWVRREWDSLMEKVNKAREGKKAKLIVGGPGVWEFTILRDEIDKYKVDYYVQGETDDVVAELFRQVAEDNIDKQMFFNGYMSYDENFHKVLKKDEKFLARGITQSAYPRLEDIPEIINPSMKGMVEVMRGCGVGCDFCEVTLRPLRYMPLNMIVDEIKINVAGGVDNAWLHSDEIFGYKHGHFFEPNEEALSELFSTVMSVPGVKTSNPTHGRISIPAGYPEMMEKLSKILKAGPRNWIGIQTGLETGSEELAKKHMPNKTLPLRIGVDGSWQDIVWQGVFVETRNYWRSAFTIQVGQEGETPEDLWETIALINKLSNSYVDGRPFEFTVTPLVNVPLGRIKSKKLNTSMLDVNGLAVYYASYRHLAKMAARDGFRDAHGNAFLKLATGGLISFGGRLMMDFIEKKAQKAGVDIDKVKRYGIESTDEITSLAQFARA 558
2 -41.200[C] COG1031 Uncharacterized Fe-S oxidoreductase  ali follow..  16  1....................................MRALIVYIDEPAAFGVPPYVSPYVRYLAGALVVHDVEVDYVTIDKESLWEIANEYDFLFVFGGITVPG-----------------RYKGGTPLTLSELQRILSIARRPIKIVGGPIVGGYSLRGGRRFDIQADYLVSGDMEAFVVSYFQGVPDPEAKSDYELID-----------------------AVAPYGAVVLEKHPNFPHVICEIEVSRGCERRCSFCTEPHGRLKSRDVQAILKEIESLYRAGCRAFRFRAANILAFGSDNGGKPSPEILEELYSGTREVPHLEVLHTDNANPSYLVTYEKECRKIVETIVRYNTPGDVFSFGVESFDENVLKKNNVQGS-----------PEEFLKAIAVVNEIGLLPGVNLIFGLPGETEETLKKNYSYLKRILDEGYLLRINIRKLLAYPGTPVYEYLKN............................................................................................. 403
3 -35.300[T] KOG2492 CDK5 activator-binding protein  ali follow..  12  73............................................DLQGNGRTVCYVTYGCQMVRSIMTKYGFV-------------------ESDKKENADIVLLMTCSI----------RDGAEKKVWNQLKLIRSNSVNKGQIVGVLG-CMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGINVQLSLDETYADVQPIRVDSA-------------------------SKTAFISIMRGCDNMCTYCVVPFTR-RSRPIESIVEEVQRLRDQGYKQVTLLGQNVNSYRDM---KSGGLTFTTLLEKVADAAPDIRFRFTSPH------PKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERMERGYTR-----------DLYLRLVDDIRHVSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYS----FCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQA................................................................. 479
4 -34.800[R] KOG4355 Predicted Fe-S oxidoreductase  ali follow..  15  65...................................................KIWIRTWGCSHMAGQLAAYGYKITENASDAD--------------------------------LWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAG------VPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARL---------------------DLPKIRKNPLIEIISISTGCLNACTYCKTKHARLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL-PTLLWKLVEVIPEGAMLRL-----GMTNPPYILEHLEEMAK--ILNHPRVYAFLHIPVQSASDSVLMEMKREYCV-----------ADFKRVVDFLKEKGITIATDIICGFPGETDQDFQETVKLVEEYKFP----SLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKI................................................................... 434
5 -34.500[S] COG1856 Uncharacterized homolog of biotin synthetase  ali follow..  9  2..................................................................................................................................................................................NVFGVIQELDV----------ELNEKLVEKLIEGFEIRKKNFGDKVFFYSPGFKHYEVEDFSVNSDISVTGRNCELMCDHCKILWHMIPATTPEELVKVGEDLKKKGIEGVLISGGS---------DKNGFVPLWDFFDAMKY---LKEELGFLLTCHVGLVDEDYVEKLKEA------NVDAVLLDIIGDNETIAQVYKL----------PHKSVEDYDRSLRLLKEAGLRIVPHVIIGLHYGKIKGEYNAIDMIAKYEPDALVL----VVVMPYYGKAKFQLLPPPSSEESAQV--ILYARKAVPNSPVVIGCARPAGADRVKLDAYSVLAGVNGIAF--AEGIVTYSKSLGLEPV...................... 321
6 -32.000[J] COG0621 2-methylthioadenine synthetase  ali follow..  15  12....................................................................................QMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTKAQEKVFSDLGRVRPLKEKNPGLIIGVAG-CVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETSGLS--------------------------QVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKYCSFCVVPYTREFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGE---DGEICDFATLLRIVHEIPGIERMRFTTSH------PREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTA-----------LEYKSIIRKLRAIDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFD----LSFVFIYSPRPGTPAANLPDD............................................................................................. 352
7 -24.000[R] COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif  ali follow..  9  25.....................................................................................................................................................................................................................................................ILLTNFCIYDCAYCINRSSSNVERTAEEVVWLTLEFYRRNYIEGLFLSSGIIRSSDH-----TMEEMVRVARELRVTHGFRGY------IHLKSIPEASPRLIEEAGLYADR----LSINIELPTDSGVSRFAPEKQPANIRRSMADIRLKIEEAKKTRRFAPAGQSTQMIVGADGADDSTILSTSRLYGSYGLR----RVYYSAFSPIPDSSKNLPLIKPPLMREHRLYQADWLYRFYGFDIGEIT.................................................................. 263
8 -23.900[R] COG1242 Predicted Fe-S oxidoreductase  ali follow..  15  35....................................................................................................................................................................................................................................................ALDGGFDCPNGCTFCSAAGSG-RALDLKVQFQQVRDKMQTKWKDGKC----IAYFQAFTNTHAPVAELREKFETVLNEPGVVGLSI---ATRPDCLPDDVVEYLAELNE---RTYLWLELGLQSAHDETGRLINRA-----------HDYDCYLEGVRKLQKHNIRICTHIINGLPKETPEMMMETAQKVVESGVDGIKIHLLHLL----KGTPMVEDYKKGDLEFLTRDGYVNLVADQLEILPPEMV---IHRITGDGGVDDLIGPVWSLNKFEVLNAIDAELVRRDS......................... 307
9 -21.400[R] COG1244 Predicted Fe-S oxidoreductase  ali follow..  9  12.............................................................................................................................................................................................................................................EPGKVLYVILPTIGCYRPCYMCSYPAQAPKKTSQERILSHFLEAVHKIKGKDDRFSIRIFTSGS-DSAEVRRDTRIRIFREISKLDNVYEVVV---ETRSEIIREDWVRELAEMV---EDKWFEVAIGLESANDDIADVINKGSTF-----------NDFVRASEIIHNAGAKVKTYLLLKPIFLSERDIEDVKFSIEKAEPYTDTFSINLTNIQK--GTLYESLWQRGEYRTPWLWSVVEVLRWAKKKFPH..................................................................... 252
10 -20.900[R] COG2516 Biotin synthase-related enzyme  ali follow..  18  30....................................................................................................................................................................................................................................................MTYYEGRCINDCKFCAQARSSRANLPAFELETVLKNFSKGNFKRICLQTID----------PNMLSDVFSLLEELSKLN-------VPISLSITPVPRSELEEFSTL------GVDYIGVGLDAASERVYKDVKISR----------YSWDDMWKFFDDVLSVF-RAVVHLIVGL-GETDKEIVETIGEVYKKG-----GIVSLFAFTPIKGTQMENFSP.............................................................................................. 221
11 -18.100[BK] KOG2535 RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase  ali follow..  7  18................................................................................................................................................................................VLVIGEIIQELLKAHEAKKDVNLMKSLVASKYGLDSSPRLVDIIAAVPQDAKKILLPKLRAKPIRTASGIAVVAVTGNICVYCSMRAIRSRYDPFLQTRHRVEQLKQLGHSEFIVMGGTFMCLPEEHDALSGHSSANVAEAVRYSEKSRTKCIGITIETRPDYCLKRHISDMLSY------GCTRLEIGVQSVYEDVARDTNRG-----------HTVRAVCESFQLGKDAGYKIVTHMMPDLPNVDFERDIEQFIEYPAFRSDGLKIYPTLVI----RGTGLYELWKTGRYKSYPPSMLVDLVAKILALVPPWT................................................................... 362
12 -17.800[H] COG0502 Biotin synthase and related enzymes  ali follow..  14  4................................................................................................................................................................................EKLQINSITPHPSVEYWSV----------CKVEALFETPFLELVYRATQV---HRKHFNPRAIQLSTLMSIKTGGCPEDCSYCPQSARYHTGLDVDEIVAKAKIAKARGAGRFCMGA------AWRGPKPKDIEKVTEIIKAVKSLG-------LETCGTFGLLQDGMAEDLKEA-------------GLDYYAPEHYAEVIGTRRF-----------DDRLSTLGKVRKAGLKVCCGGIVGM-NETRKERAGLIASLANLDPQPESV---INQLVKVEGTPLADAEE.............................................................................................. 250
13 -17.800[KB] COG1243 Histone acetyltransferase  ali follow..  9  10...........................................................................................................................................................................................................................................MLSGVTIVSIMTHPHSCPHGCVFCPGGVDVDTPQSYYGREPTLMRAIENDYDPFHQVQSRLLIIMGGTFLSLPIDYQDWFVTYAKNEKAEVRCVGMTIETKPDWAKEWHADQMLRL------GATKVELGVQTVYDDILKFTNRG-----------HTVKDSIESTRILKDSGFKVVYHVMLGLPKSDPDKDLEAFKTIFSDPNFRPDMLKIYPTLV-VETAPLANLWRRGLYKPYGTETLIELISEMYRYIPKWV................................................................... 285
14 -17.200[H] KOG2900 Biotin synthase  ali follow..  12  1..........................................................................................................................................................................MFTRTIRQQIRRSSALSLVRNNWTR-------------EEIQKIYDTPLIDLIFRAASIHRKFHDPKKVQQCTLLSIKTGGCTEDCKYCAQSSKATKLMKIDEVLEKAKIAKAKGSTRFCMGSAWRDLNGRNRTF----KNILEIIKEVRSMD-------MEVCVTLGMLNEQQAKELKDA------GLTAYNHNLDT-SREYYSKIISTRTY-----------DERLNTIDNLRKAGLKVCSGGILGLGEKKHDRVGLIHSLTMPTHPESVPFNL----LVPIPGTPVGDAVKERLPIHP....................................................................................... 262
15 -16.800[HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes  ali follow..  12  2.................................................................................................................................................................................NSRSTAEITDYLNEKITK----------KDALELFSLPIHAVGRIADEI---RKVKCGDLVTFVNDTNINYTNICLSKCRFCAFYAREKGYVSHEEILRKVGYAVKMGATQIMLQGGM----------DLGLEWFEELFRKIKARHSLSPPEIVFLAKLERSSIREVLDRLK-----------------AAGLDSLPGGGAEILVDSRKISPNKCSSDEWLRVMETAHSLNMPTTATMMFGH-VESDGDIVEHLIKIRELQEKTGGFTA----FIPWTFQPGNTELYAE............................................................................................ 256
16 -16.700[H] COG0320 Lipoate synthase  ali follow..  11  85...................................................................................................................................................................................................................................................ATFMILGACTRRCPFCDVAHGRPVTPDANEPEKLAQTIQDMGLRYVVITSVDRDDLRDG-----GAQHFADCISAIRAKNPTIKIETLVPDFRG--RMDRALDILTAT------PPDVFNHNLEN-VPRVYRQVRPGANYDWSL-------KLLERFKE--AHPDIPTKSGLMVGL-GETNAEIVEVMHDLRRHGVTMLTLG----QYLQPSRHHL................................................................................................... 273
17 -15.100[H] KOG2672 Lipoate synthase  ali follow..  13  116.............................................................................................................................................................................................................................................DKSRATATIMLMGDCTRGCRFCSVKSRRPGPLDPNEPENTAEAIKQWNLGYIVLTS-----VDRDDLTDLGANHIAKTIQKIKEKA---------PHILVEALTPDFSGRMDLVEIVAKSGLDVFAHNVET-VEELTPFVRDRRA----------TYRQSLSVLKHVKKTCLITKTSIMLGL-GETDAEILTTLKDLLEHNVDVVTFG----QYMRPTKRHLKVQE............................................................................................... 315
18 -15.000[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases  ali follow..  10  18...........................................................................................................................................................................................................................................................CVQKCPYCDFNSHAQKGHIIAHLLQDLHQDRQRFQDSIQDRSLHSIFIGGGTPSLFSAEGIHTLLSGVAQCLPFQPDIEITLEANPGTAEAERFKGYVQA------GVTRISMGIQSFNDDKLVRLGR------------HNAQEAKSAVGFAKLSGLSFNLDLMHGLPNQTLEEALSDLQQAIALEPP----HLSWYQLTIEPNTMFAY................................................................................................. 212
19 -13.700[R] COG2100 Predicted Fe-S oxidoreductase  ali follow..  13  56......................................................................................................................................................................................LVINTDNEDIERFIAFYIQNNLGGLLKNRYTKRKVIYIHEGMGVPLLGYNAFGLIDRGTNLIQVRGSTGCNMRCIFCSVDEGPYSRTYLLKWFDWVAKEKGKGLEAHLDAQGEPLLY----------PFIVELVQALREHPHVSVISMQSNGV---LLNDKLVEELAEA------GLDRVNLSIHSLDPEKAKMLMGIKDYDL---------NHVLEMAEALVNAGIDVLIAPVI-MFGVNDDEAEAFIEFARRIGAGKRWPALGFQNYIPY........................................................................................................ 308
20 -13.200[R] COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme  ali follow..  13  40....................................................................................................................................................................................................................................................VLFVTGVCPRNCFYCPLSPWRRKERPVRSEKDIIEEAKIQDARGAGITGGDPL---------ARLSRTVEYIRLLKEEFGKKFH--IHLYTTGILASEEALEKLYDA------GLDEIRFHPDL------------------FQPNSKFFEREIENMKKAFDFGWDVGGEVPA----GFEDRIKWFASLLDKLGAKFLNINELEFS............................................................................................................ 214
21 -13.100[R] COG1964 Predicted Fe-S oxidoreductases  ali follow..  11  28.......................................................................................................................................................................LEAEVYEENGKVM--IRKVCEEHGEFVDVYWGDAEMFKKAARFAADGHGISTPITQNTTCPFSCGLCNNHKSHTALLNIVLTNRCDLACWYCFFYARRAGYEQIREMVRKAKNMKPIGCNAVQLTGGEPTL----------RDDLIDIIRMI-KEEGYDHIQLNTNGIRL-AEDPDFALRVRVA------GVNTVYLSFDGVDEKTNPKNH----------------HEIPKILENCRRAQLGLVLVPTV-IKGVNDHQLGDIIRFAAE------IDIVRGVNFQPVSLV..................................................................................................... 281
22 -12.900[R] COG0535 Predicted Fe-S oxidoreductases  ali follow..  16  12....................................................................................................................................................................................................................................................DFNLTNGCNLACSHCHSASGPKLELKTEEILQTIDALHIIGALKIAFAGGEPFI----------RRDIFNILSHACSLPGWGISVITNGFY----LNSLTVEKLKA-----QCPNLSINISVDGSTPAGYSTL-RKQLNRPDADPQPLF-ERVLSGIDNVVRSGMSNSVNFTI---KATLHDIEATYELVVD.......................................................................................................................... 182
23 -12.700[L] COG1533 DNA repair photolyase  ali follow..  9  68....................................................................................................................................................................................................................................................SINPYRGCEHGCVYCFARPTHAKPDAARLLDKELSKEGYQP--RTIAIGTNTDPYQPIEK---QYRIMREILEVLEARG----------PVGIVTKSALVTRDIDILSRMAERGLAKVALSVTTLDRMLARTMEPRASTP----------TKRLEAIRQLSDAGIPTSVMVAPIIPGLTDQEMERILDSAYAAGAREA.................................................................................................................... 257
24 -12.600[R] COG5014 Predicted Fe-S oxidoreductase  ali follow..  12  78....................................................................................................................................................................................................................................................VTADTVGCKFLCAYCLRPKRAGDFLSPEEVAERLEISKKRKCDLFRISGAEPILG----------RRSAEHVRKVIELVNNTFILETNGLM--FGFDPSLVDLFVNLNVL-------IRVSVKGWDEESFEKI------------TGASGEYFRYQLKALEHLHGKVHFWVAVVYDLFREKGLKELEKRLP----IPCRIEKEYLEMYP......................................................................................................... 258
25 -11.400[H] COG2896 Molybdenum cofactor biosynthesis enzyme  ali follow..  13  29.....................................................................................................................................................................................................................................................VSVTDRCDFRCTYCMAEHMTFLPKTLEELDRLCSVFIEKGVRKLRLT-------GGEPLVRKNIMHLIGNLSRHLKSGALDELTLTTNGSQLARFAGELAD----------CGVRRINVSLDTLNPEKFRTITRWGDL-----------SRVLEGIDAAQKAGIHVKINAVA-LKDFNDAEIPELIRWAHG-----RGMDVTLIETMPM........................................................................................................ 207
26 -10.900[H] KOG2876 Molybdenum cofactor biosynthesis pathway protein  ali follow..  14  74.....................................................................................................................................................................................................................................................ISLTEKCNLRCQYCMPETPKANLLTTEEILTLARLFVKEGIDKIRLTGGEPLI----------RPDVVDIVAQLQRLEGLRTIGVTTNGINLARLLPQLQK----------AGLSAINISLDTLVPAKFEFIVRRKGF-----------HKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALTEG-----LPLDVRFIEYMPFDGN..................................................................................................... 254
27 -10.100[R] COG1313 Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins  ali follow..  13  126........................................................................................................................................................................................................................................................FSGCNFRCVFCQSQFRIGVEYLPEYMAIKIEKAFQLGARNVNFVGGE----------TPNLPFILETLRYV--RVPIPIVWNSNM-----YMSEEAMKLLDGVVDI-------YLGDFKYGNDRCAMKYSKV----------PRYWEVVTRNFLLAKEHFRAEFLIRHLVMPNHLDCCTKPILRWIAENLGREIRVN-VMFQYRP......................................................................................................... 300
28 -9.980[R] COG0820 Predicted Fe-S-cluster redox enzyme  ali follow..  11  92.....................................................................................................................................................................................................................................DVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFRNLRVSEIIGQVWRAAREIGLEKETGRRNVVMMGMGEPLL-NMKNLIPALEIMLDDLGFGL-----SKRRVTVSTSGVVSGLEQMIGQID---VALAISLHAPNDKLRSEIMP--------INDRWNIEAFLEVVRSSNANRGKVTVEYVL---NDGTEHAHELAELLKGTP-----CKINLIPFNPYPGSPYKKPSNSRID.......................................................................................... 317
29 -9.890[C] COG0731 Fe-S oxidoreductases  ali follow..  12  87...................................................................................................................................................................................................................................................LQMTPTLICNQRCLFCVPVPAPGEWDSPEKIVEESIACQRKLITGFGGSPNALRERWLEGNEPNNYPYLPELIEEYEKRG-------FTTFLVTNGTVPSMLAKVNP---------SQLYMSLDAPDLKTYLRVCQPKS--------PALWDRINESLDIMKDKCSRTVIRTTL-VKGENIFNPKGYAELIKRASPDFVEIKAY............................................................................................................... 281
30 -9.600[R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)  ali follow..  10  5....................................................................................................................................................................................................................................................AKPTSYQCNLKCDYCENIFQHKGWMTEETLETFIERYISASGHDVYF------TWQGGEPTMAGLDFFEKAIQYQNRYKGTKKIHNAL-QTNGILLDDAWCLFLRE---------NHFLVGVSDGPKELHDRYRVTRS--------KGSFDKVMAGIEQLKKHQVEFNTLTVIN--RINVKYPLEVYRTLKSIGAKHIQF.................................................................................................................. 185
31 -9.140[E] COG1509 Lysine 2,3-aminomutase  ali follow..  10  63......................................................................................................................................................................................LLNLIDWSNFLEDPIRKQFIPVGSELLPSHPLLKMDSLHERKSSPVDG-----LVHRYKDKVLLLATDRCPVYCRFCLKKKVSPFQSRWDTILAYLRVTPV--IADVVVSGGD---------FRLKPSRLLAIGMGLLSIPSIRRIRFATKGLAV-TSDHKWTDALVNISDAGRDQGVEISFHTHFNHPREIT-------------------DYTIAAAELLFKRGIRMRNQSVL---AGVNDDPEVMKQLVKKLSDLHIQPY-YVYTCDLVDGIEHMRCSVRLACQIEKAVRG.................................................................................. 336
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.