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Query: [C] COG1145 Ferredoxin, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHHSHHLEIYEKLREKLNKAPIGLPKTVSGVEKELLSVLFDEEEAKIAVHMPFIRFTAEQLAERTGKSLEYVEKILNEMAKKGTVWKGEKDGQTYYRLFPVIVGFAETPFWPGPGKDPRQEKLARLWSQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIAVGYCPCRVMARLVGEGCRHSIENCIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTERSKHVATICNCCSDCCVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAIELVERDELLELPDGMTYVQELLADKGRDPSGLFLast
1 -103.000[C] COG1145 Ferredoxin  ali  100  1MHHSHHLEIYEKLREKLNKAPIGLPKTVSGVEKELLSVLFDEEEAKIAVHMPFIRFTAEQLAERTGKSLEYVEKILNEMAKKGTVWKGEKDGQTYYRLFPVIVGFAETPFWPGPGKDPRQEKLARLWSQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIAVGYCPCRVMARLVGEGCRHSIENCIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTERSKHVATICNCCSDCCVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAIELVERDELLELPDGMTYVQELLADKGRDPSGLF 368
2 -29.800[C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB  ali follow..  28  101................................................................................................................................................................................................................................................................................QELTPARMVAVIDENNCIGCTKCIQACPVDAIVGATR-AMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDS...................... 173
3 -28.900[C] COG1146 Ferredoxin  ali follow..  21  33...................................................................................................................................................................................................................................................................................KEIEWYPTIDYDKCVTCGICFVTCGRRVFDFDKKEGKVIVPYNCMVACQTCMNLCPTGAISFPDASYIKKLVAQ................... 108
4 -28.500[C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit  ali follow..  34  42.....................................................................................................................................................................................................................................................................................RTFMPVIDESKCVKCYICWKFCPEPAIYIKED-GFVAIDYDYCKGCGICANECPTKAITMVREEK.......................... 105
5 -26.200[C] KOG3256 NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit  ali follow..  31  112..........................................................................................................................................................................................................................................................................................PSGEERCIACKLCEAICPAQAITIEAEERRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHE................... 186
6 -23.400[C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)  ali follow..  29  58............................................................................................................................................................................................................................................................................................GEERCVACNLCAVACPVGCISLQKAETFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQ................... 130
7 -22.000[C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit  ali follow..  13  17ANKAAIKIIGDNTDLYAQGYFSYDSKKSGGLTVSHLR--FGENRIRSAYLI-----QQADFVSCSTSAYLRSYDLLKGLKPGGTF---------------LLNTIWEGEQLERHLPAAMREYIAKNNIQFYTLNAMRIAGEAGLGRRINTVMQTAFFRVTDILPFEKALADLKASAIATYGK---MAVAEKNILAMDQTVANLHKVEVPESWANPVLTAEASTATEKPAYVKNILEP----VNRLEGDNLTVGDLISNGMVSGAYPPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNERIQVSPMDCTGCNLCAETCPAKALVMKPFEEVAAKENPNWSFAINVKPKKNP..... 377
8 -21.300[R] COG2768 Uncharacterized Fe-S center protein  ali follow..  19  197.........................................................................................................................................................................................................................................................................................PQIDEEKCTKCDECVKICPSNAIE------DYQINREKCVKCLGCSEACDYGAVKTFWVFGRDVSERIVECTKGVFKVQKNFAYLNF 277
9 -20.400[C] COG1141 Ferredoxin  ali follow..  20  41...................................................................................................................................................................................................................................................................................ILRQKGVYVDEITCIGCKHCAHVAR-NTFYIEPDYGRSRVDGDAEEVIQEAIDTCPVDCIHWVDYTELKNLEEDRKF................ 119
10 -20.300[C] COG0348 Polyferredoxin  ali follow..  18  197...................................................................................................................................................................................................................................................................CGHLCPIGAAYGVIGAKGLFRIKVEHRQQCDNCMDCYNVCPEPQVLRDKKSESPLVLSKDCISCGRCIDVCPEKVFIFTTRFNHSVNHSG................... 290
11 -19.200[C] COG1142 Fe-S-cluster-containing hydrogenase components 2  ali follow..  21  15............................................................................................................................................................................................................................................................CHTCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDCAVVCPVNAIT--RVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRP.......................... 104
12 -18.300[C] COG0437 Fe-S-cluster-containing hydrogenase components 1  ali follow..  18  8..........................................................................................................................................................................FIDSSRCTGCKTCACKD---------------------------FKDLGPEVSFRRIYEY--AGGDWQEDNGVWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHM----TKCDGC-ICVESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPNIVI 183
13 -17.900[C] COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain  ali follow..  11  1MSIKTSHLKFPRINEEIQN-------DIMRKAVVMAQERIGANRQKMVEELGHWEEWREHAKEIRNHVIENLDAYLYQLSEK-----VIQNGGHVYFA-------------------ATAEDATNYIKNVAKQKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYILQSDTPEEMTLFIRETIRNDFLEADIGVSGCVAETGSVCLVTNEGNLRLATSERLAPTFKEVDVLITLLARSAVGARLTGYNTWLTGPRLAGETDGPEEFHLVIVDNGRSKMLGSRCIRCGACLNTCPIGSVISPILGGYEEFKDSACSLCTACNQVCPVKI-NLLLKHRRHIAESGMNPLAERLSVK........ 404
14 -17.700[C] COG1140 Nitrate reductase beta subunit  ali follow..  14  1.................................................................................................................................................................MKIRSQVGMVLNLDKCIGCHTCTCKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHTAPEGSKSQPIARPRSLITGERACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSE....................... 242
15 -17.200[C] COG1035 Coenzyme F420-reducing hydrogenase, beta subunit  ali follow..  21  1...................................................................................................................................................................................................................................................................................MPPKIAEVIDYDVCAACGACEAVCPIGAVTVKKAAGIRDGGYQVCEGCLTCSRVCPVVDGFIQDELTNVRKFFGARSKDNVGSQDGGVASGIL 103
16 -16.700[C] COG1150 Heterodisulfide reductase, subunit C  ali follow..  21  36...........................................................................................................................................................................................................................................................................................LSVQACYQCGTCTGSCPSGRRKLQLGLVDEVIKSDMCTTCYTCYERCPRGV----------KIVDAVKAARNLAAKKGYM..... 118
17 -16.600[C] COG2440 Ferredoxin-like protein  ali follow..  16  28.........................................................................................................................................................................................................................................................................................IKVRPHERPSANLLTHICPAKCYELNDK-GQVETTSDGCMECGTCRVLCEASGE................................. 82
18 -16.000[C] COG1148 Heterodisulfide reductase, subunit A and related polyferredoxins  ali follow..  21  553...............................................................................................................................................................................................................................................VYLAGVAQGPKDIPDAVAQASGAAARAAIPMVKGEVEIEPIVAVTDSDVCGGCEVCIELCPFGAISIEE--GHANVNVALCKGCGTCVAACPSGAMDQQHFRT----EQIMAQIEAALNEQAK...... 669
19 -15.300[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit  ali follow..  17  156..................................................................................................................................................................................................................................................................................QSHEDRLKLDGLYECILCACCSTSCPSYWWNGDRYLGPAVLLQARCHTIMNCAQACPKG----------LNPAKAIAEIKKMMVERR....... 258
20 -15.200[Y] KOG2439 Nuclear architecture related protein  ali follow..  15  2.....................................................................................................................................................................................................................................................................................SALLSESDLNPALACVKPTQVSGGKKDNVNMQLEKVSITLSDCLACSGCITSSEEILLSSQSHSVFLKGKLSQQQDKFLVVSVSPQCRLSL 109
21 -14.700[R] COG4624 Iron only hydrogenase large subunit, C-terminal domain  ali follow..  11  8........................................................................................................................................................................................................................................................................................PMSFFADLPKDNKKCIKIGSPLALSLSD-----------CLACSGCVSADEAGALSEDLS-------FVLDLSPQTSFVLSPQSKINI 77
22 -14.700[C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits  ali follow..  14  249VGIIACGLSYAYTKEALENLNLNLPERLIENFVSQMKKVIVVEEVDPFVELHVRAMGLAEVYGKMNYNVGRVETGIAKALGIKPSRDYEGIVAESQKLAALCPGCPHSASFYAIRRVVDELGDAALPSDIGCYTLGINKPLEGVDITICMGASVGVSNGLAHVLNNKIIATIGDSTFIHAGIPPLINAVYNHADFVLVILDNSTTGMTGHQPHPGTGFRGCGEAGKAVRIEDIVRGCGVLRRALNHDGVAVVIARQPCAILWSRARRR--------EGKIVTYKVTEDCTLCMECVNACP----ALIFDGEKVSIDQSLCVGCAVCAKICPNRAIKPAKSN........................... 623
23 -14.700[C] KOG3049 Succinate dehydrogenase, Fe-S protein subunit  ali follow..  16  172..................................................................................................................................................................................................................................................................................QSIEEREKLDGLYECILCACCSTSCPIDSRDDFTEERLAKLQDPRCHTIMNCTRTCPKG----------LNPGKAIAEIKKMMATYK....... 274
24 -14.600[C] COG1036 Archaeal flavoproteins  ali follow..  12  1..............................................................................MSFKSIAWGITGAGHFLDRSYQVF---------------------KELKQRDPELSVNTYISRAAEEVLRMYGLEQKLVKISGGDYLEEIFRESEQGSSSPKVGRFLLDRYDALFVTPATSNTVSKIAYGIADSLVTNAVAQAVKGKVPVYVVPVDIEGSIISEM-----PYNIDRKQCRHCETCPPRENCPHGAITEKNGVTDQIELLKCKGCGICKELCPYNAIKGGPVEVLV----RDVDMRGITVLESPEAILELF.............................. 239
25 -14.100[R] COG3383 Uncharacterized anaerobic dehydrogenase  ali follow..  13  1.....................................................................................................................................................MGAKVSVRINGEARDVVEGTRILDYLNAEGIHPHICYSEQIGPIQSCDTCM---CEVDGELMRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQNDFTHPFYRYDPDQCILCGRCVEACQNETLSIDWERSQPRVNLSSCVSCGLCATVCPCNALM................................ 207
26 -14.000[C] COG1152 CO dehydrogenase/acetyl-CoA synthase alpha subunit  ali follow..  10  165..REVMDYAEEQMSHLLSACHTGQEGDSKDFESKAFHATIDTEKPVVLCI-GHNVLPGADIVDYLDENEMEDQVEVCGICCAAIDVTRYNEAA-------------KVVGPLSKQLRFIRSGVADVIVVDEQCVRTDVLEEALKNRSAVIATTDKMCLGLPDMTDEDPDKIVNDL----------------------------------------------INGNIEGALILDPEKVGEVAVK------------------TAMKLAPIRKSLKKLPDIDEIIELASECTDCGWCQRVCPNSAVKKAADGDLSKLEEELCYTCGRCEQECERN-IPIVSMVTKAGERRVKDEKYRIRAGRGPAQDVEI 496
27 -13.900[C] COG1600 Uncharacterized Fe-S protein  ali follow..  25  195.............................................................................................................................................................................................................................................................................................EEGCGKCVACMTICPTGAIV-----EPYTVDARRCIGCDDCQLICPWNRYSQLTDEADFSPRKALHDLLELFSWSEAQFLKVT 298
28 -13.200[C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC  ali follow..  11  127YRQRDKMALLDRIHQA-AGFPTASKLQGGLNGIITL--IINAAECEITADDRLMQEHADEVITGIHILRHLLQ------PQQVLIGIEDNKPEAIAALQRALRGQDDIHLRVVPTKYPSGGAKQLT----------------KILTGKEVPFGKHSSSIGVLM--QNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLYLLKLAGF---KPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCIL-----------------APAETEMGLSEPEQSCIRCGLCVDACPAGLLRGEEHEKARNHNLFDCIECGACAYVCPSN-IPLVQYYRQEKAEIRALDQESARAAEAKAR.... 459
29 -12.800[C] COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain  ali follow..  34  59........................................................................................................................................................................................................................................................................................KARIMPEKCSSCGLCYDLCRFGAVVAEDG---YYVDEKKCEGCAFCFNVCPERAIEMENVK........................... 116
30 -12.100[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  13  5..........................................................................................................................................................TIHVDGKEYEVNGADNLLEACLSLGL--CACRKQYQNAEDTRGRLVMSCMT--------ASDGTFISIDDEEAKQFRESVVEWLMTNHPHD---------CPVCEEGGNCHLQDMTVMTGHSFRRYFISHEMNRCIACYRCVRYYK-TDLGVYGAHDNVYFGRPESEFSGNLVEICPTGVFT................................ 209
31 -11.900[R] COG1453 Predicted oxidoreductases of the aldo/keto reductase family  ali follow..  14  3.........YRKMPKELSILGFGCGSVDEERATRQVRYAIDESEPFLGRALADGYREKVKLATKLPSWMVKSREDMDKFLNAQL--KLKTDHIDYYLIHN-----LSGETWDRIEALNVIDFFEKAKSDGRIVNAGFSFHGLANDFKRIVDAYPQIQYNFMDEKHQAGTEGLKYAASKGLGVMIMEPLRGNLARTVPLAIENIWSEADVERTPVEWALRWVWNHPEVTVVLSGMNEEVHIKENLKIASEA-----------YPNSLTEAELQLVSKVEQKYRQIMKVGCTGCQYCMP-CPYIGLLSGAVSGGKPGMASQCVQCGQCLEKCPQH-IDIPTILESVAEELEGSDLEERIAIVKQE..... 395
32 -11.500[C] KOG2282 NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit  ali follow..  12  33..........................................................................................................................................................EVFVDGQSVMVEPGTTVLQACEKVGM--CNCRM--------CLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLD---------CPICDQGGECDLQDQSMMFGNDRSRFLVKTIMTRCIQCTRCIRFASVDDLGTTGRGNDMQVGT-MSELSGNIIDICPVGALT................................ 232
33 -11.000[K] COG1378 Predicted transcriptional regulators  ali follow..  14  1MAHACLIEIKKVYNFVVTFV------VTMDEIIEVLKRLFRDYEARVYATLTRGEATASEIHRVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAIDP----------------------------ESVLEEYKEQLVSAVDTAIRSIRESEDFSTLHPVWCVRGLAGIKNRAKAML............................................................................................................................................................................................. 147
34 -10.600[S] COG3592 Uncharacterized conserved protein  ali follow..  15  12................................................................................................................................................................................................................................................................................RKYRGADVDIYFNTNICAHSGNCVKGNA--ELFNLDRKPWIMPDNVPKEEAKRVIHTCPSGALQYIEK............................ 77
35 -10.600[K] KOG2845 Activating signal cointegrator 1  ali follow..  12  1MGAVSGEPLVHWCTQQLRKT---FGLDVSEEIIQYVLSIESAEEIR------------EYVTDLLQGNEGKKGQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTEPDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTRERQDRLAVALPGRHPCDC-----------------------------------------------LGQKHKLI----------------------------------------------NNCLICGRIV--CEQEGS-------------GPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTK... 245
36 -10.200[T] KOG4825 Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa)  ali follow..  449...SYREDALLALSKKLMEMPVGTPKEDLKNTLRLVRRAIKDIVTSVFASLKLLKMIITQYIPKHKLSKLETAHCVERTIPV--LLTRTGDSSARLRVTAANFIQEMALFKEVKSLQIIPSYLVQPLKANSSVHLAMSQMGLLARLLKDLGTGSSGFTIDNVMKFASILEYLPPDDSNTRRNILYKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIKALQGQLAALKEIQAEVQEKESDAVKPKNQDIQGGKAAPAEALGIPDEHYLDNLCIFCGERSESRCDHCKQCFGKCYRCSEAVFKEELPRHIKHKDCNPCPLCHENCTMNLRKTHILQKAPALQPGKSSAVAASGPLGSKAG... 904
37 -9.930[C] COG1726 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA  ali follow..  55..........QVLFEDKKNPGVVFTAPASGTVTAIHR---KRVLQSVVIKIEGNEQITFEKYTTEQLNQLTSEQVRQNLQASGLVPAVDATPVSIFVNAPLCADPQVIVQQSAQAFEAGLTVLSRLHEGKVYLCKAANASIPSPSIANL-PAGLSGTHIHFIDPVSNYQDVIAVGKLFTTGELDVSRVVSLAGPQVKNPRLVRTVLGANLSQLTANEV-----KDGENRVISGSVLSGVSVLEEGREKEFLGWIMPGANKYSLSRTVLGHFSKKLFNFTTALNGGERAMVPIGAYERVMPLDDLAAGDTDSAQALGCLELDDLALCTFVCPGKN----------EYGPLLRQALDKIEKEG....... 446
38 -9.370[K] COG4190 Predicted transcriptional regulator  ali follow..  24VTVTPSSEFHDDITDSIAALEQGDAMDSTPTLYDDLMDTLTPRVLELIEAIQEEPASINETARVVDRDVKNVHEELSRLAHLGIIFFEEDGQRKRPVVW............................................................................................................................................................................................................................................................................. 127
39 -9.330[O] KOG1100 Predicted E3 ubiquitin ligase  ali follow..  22  274...................................................................................................................................................................................................................................................................................QDTKKMCRVGMSMCRSCGKCRHMC-------------------LCSVCGSSLNTCPTASLHV............................... 331
40 -9.310[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  15  3................................................................................................................................................................................................................................................................................................CESCGVCFD-C----------------KRYYCANCRRC-KRCSRTDLLKLKPKDLIFYLQSKHISTEGCLEKEELVGLVL 85
41 -9.090[K] KOG3233 RNA polymerase III, subunit C34  ali follow..  11  42MPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDS-SDNQEKLVYQIIEDAGNKSRDIRYKSNLPLTEINKILKNLESKKLI-SVAASKKKVYMLYNLQPD--SVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNS-----SFASSHEVWKYICELGISKV----------------------------------------ELSMEDIETILNTLIYDGKVEMTIIAAKEGTV-------------GSVDGHMKLYRAVNPIIPPTGLVRAPCGLCFDDCHEGG----------EISPSNCI............................................... 308
42 -9.050[R] KOG1819 FYVE finger-containing proteins  ali follow..  25  564...........................................................................................................................................................................................................................................................................................VPDEDCEQCTAC--SMPFNFVR-----------RHHCRNCGFC-HKCSCNTISI............................... 606

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24