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Query: [S] COG1359 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIQMVSINVKQGHAADFLEAFRINYEGTRQEPGNLRFDVLRNPDDDHSFVIYEVFKSPEALDAHRKTEHYQECVRRIDPILAGPRTKTFYNVEMADFLAAGQALast
1 -65.000[S] COG1359 Uncharacterized conserved protein  ali  100  1MLIQMVSINVKQGHAADFLEAFRINYEGTRQEPGNLRFDVLRNPDDDHSFVIYEVFKSPEALDAHRKTEHYQECVRRIDPILAGPRTKTFYNVEMADFLAAGQA 104
2 -46.500[R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides  ali follow..  11  1MIYEIAMLPVQKDKISEFRQAFGDVVPLLKRARGYRGHVLAQGVETPEVFNLIVRWRSLNDTPGFEASEDHEQFMEGIQDYFSGEPTVYHLEGDNSGWSDYRHG 105
3 -21.300[S] COG3224 Uncharacterized protein conserved in bacteria  ali follow..  12  15.FEYHFAHRVTPDHHEIFLECQEQLKILVTKYPGYISSESTESEGDIFVAETVIRFDTLENFMGWIDSPERRQLIYLEENAGYQFEGKVNTE............ 107
4 -8.680[S] COG3254 Uncharacterized conserved protein  ali follow..  8  1MQRMGMVLGLKPEKVEEYVRLHAAVVLTMISACNIKNYSIYLRRPENLLFSYFEY-DYAADMAKMAADPKTQEWWAVCIPCQEP.................... 89
5 -5.910[A] KOG3408 U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing  ali follow..  22  63.....................................................RYFDSSQALLVHKKGKVHKRRLKNLRE........................ 89
6 -5.910[R] COG5112 U1-like Zn-finger-containing protein  ali follow..  22  63.....................................................RYFDSSQALLVHKKGKVHKRRLKNLRE........................ 89
7 -5.640[R] COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger  ali follow..  20  1....................MVRLKAIIVRDRDGEEFLRCPR-----------MVFKRRKDYIKHVNKAHGW................................ 43
8 -5.340[C] KOG3365 NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit  ali follow..  7  62....QQESEKDKSPHERLRILYTEILDVLEQIPKNAAYRKYIEQITNEKPAVVKVETDVKKLEDQLQGGQIEEKEVSVAI........................ 137
9 -5.120[S] COG5507 Uncharacterized conserved protein  ali follow..  15  1MAYVDGFLVAVPTANIEAYKKLASAAGAVWKEHGALNYRAVQAKDDETVVFSWIVYRSRQDRDA........................................ 81
10 -4.950[C] KOG3309 Ferredoxin  ali follow..  18  139......KLEEPTDEENDMLDLAFGLTETSR---GC---QVIARPELDGVRLAIPSATRNFAVDGFVPKPH.................................. 197
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;