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Query: [K] COG1414 Transcriptional regulator, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREPTLETDDRYRAPALDKGLDILELLASVDGGLTQAEIAKHLDRSPNEFYRMLDRLVKRGYVTKLDGDRYSLTLKLFGLAQLHAPVRRLASFATPFMRELADRSKQANQLAVFDRGSVVVIAQQEAPDYWGISIRVGSHISLFDTGSGHVLLAFRSPEEREMMIAAHVKSRDEVNLDQDFYDRLDQIRERGYEMMASAQMAGAYNLSAPILGPDGTCVAALTCPYITLVNPSSAPDITQTISLLQKTVRDLSKLVGADVGVTGLast
1 -93.900[K] COG1414 Transcriptional regulator  ali  100  1MREPTLETDDRYRAPALDKGLDILELLASVDGGLTQAEIAKHLDRSPNEFYRMLDRLVKRGYVTKLDGDRYSLTLKLFGLAQLHAPVRRLASFATPFMRELADRSKQANQLAVFDRGSVVVIAQQEAPDYWGISIRVGSHISLFDTGSGHVLLAFRSPEEREMMIAAHVKSRDEVNLDQDFYDRLDQIRERGYEMMASAQMAGAYNLSAPILGPDGTCVAALTCPYITLVNPSSAPDITQTISLLQKTVRDLSKLVGADVGVTG 264
2 -19.800[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  3............LSPVFARRLYLALLVESLER-PNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDGRRHNDGYYQLDWGPFDSQWVTERKKDIAASLGFCA............................................................................................................................................................... 95
3 -14.600[K] COG3355 Predicted transcriptional regulator  ali follow..  16  30....................VEVLHILLQNG-KMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKAPAEKEERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEA............................................................................................................................................................ 116
4 -14.300[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  18  1MKQEEMLKKLEDLLKAIKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNLYRRGLLKRELVQS.................................................................................................................................................................................................. 73
5 -13.200[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  1MKEYSIFREIINDMDTLKRHISVINVLLREQ-PIGIIKLSQETGIPEHKIRYSLRILEQENIISPSREGAILTPDFIEHKEQIIADAEKVLEEATKIAEDVRKMLEK............................................................................................................................................................. 106
6 -13.000[K] COG4190 Predicted transcriptional regulator  ali follow..  16  69.................PRVLELIEAIRQEE-PASINETARVVDRDVKNVHEELSRLAHLGIIFFEEDGQPVVWFDELVINLPFDPEAGDTAAAAP........................................................................................................................................................................ 149
7 -12.600[K] COG3432 Predicted transcriptional regulator  ali follow..  12  40......................MFDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDYEITEKGKLLRTHIEEFIKIRENLYSAKEKVSELLRT............................................................................................................................................................. 127
8 -12.100[K] COG1654 Biotin operon repressor  ali follow..  21  1.............MKDTTVPLTLISLLADGE--HSGEQLGERLGMSRAAINKHIQTLRDWGVVFTVPGKGYSL............................................................................................................................................................................................... 60
9 -11.800[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  13  1MEPIVDGNILRSLNRSELRRKVLFYLLSIYPYRSYLSEISRAVKSDPSNVKGCLESLIGLGLVIVEQSKNGFKYFKINPEIVEEVRNMK............................................................................................................................................................................... 99
10 -11.400[K] COG1846 Transcriptional regulators  ali follow..  11  45....................IHTIDAIGTDE-GLLMKELAERLGVTKGAVSQLVDRLEAKALVRRHPKVSRGIQVVLTDKGREAYRAHSFTKEEIAIFEQCVSKLRDILS.......................................................................................................................................................... 148
11 -11.200[K] COG1510 Predicted transcriptional regulators  ali follow..  12  1MKKTALDIIEHAEEHLIEK--RVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVREMIDANIAEKVRKDLYDVEQDYYQISLFAANWTKVVSKNKVLYKKLNRELSDL............................................................................................................................................................ 128
12 -11.100[K] COG4742 Predicted transcriptional regulator  ali follow..  12  1.....MQSELIDVVFRSQKRRDLLLLLGE--EPRTMEDIKVLLDVSPTAILPQIKRLTDSNLVIQKNGS-YELGEQVFKKARALVDVLTLVEKDNYWIEHDLGGIPQYLKIGEIKDCNLVKADPSQIFEPFASSRYLMVFSSFYRPEFLPLYSKLGRLESEVSLIFTESVLEKFLYNYEKKIRRLATMDNTELCVCKDGVKIAELIVMISLFDSQGRFYHEYMYCSEPQAIS------RELFDFYESRALRVDGE......... 260
13 -10.800[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  32  6....................LFLLIKLAGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRK.................................................................................................................................................................................................. 60
14 -10.800[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  19  86....................ILILHSIRHRDREKKLADICLALDIETHIATYAIRKLEKAGLLTTGKAAKEKTGAEACATANARPSEETLSELAA-LLRFMSGAFNQATRSAI....................................................................................................................................................... 197
15 -10.600[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  26  227.IIEPAGNPDIETAALNRIPLEVLDIIRGHKGRITQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENI............................................................................................................................................................................................... 303
16 -10.600[K] COG1497 Predicted transcriptional regulator  ali follow..  11  13....................FQILSEIAMRQPYVRQKDIADKLGVTVQAVSENIKSLIAEGLVESGSGRSYKITRRGAEKIKEAAM--DLRRYADEVLESMSFYRSVWPAIA----------EDLQEGDKVELFMEDGILYARRRRNGEAYAEVLHPARRGEDVALSELGGTIPLQRGKVTIAVLPGISEGG-ELSRGHDRTGIMGTVSRAAANKLNLQVDFEFATPHAALAAAKRGLNVLVLAVGKMSRSITEKL........ 247
17 -10.500[K] COG2378 Predicted transcriptional regulator  ali follow..  18  16.........EMYNMRKASRLFEIIQILRLARRPVTAQTIADMLEVTARSVYRDIAALQTMRVIEGERGVGYIL-TEAIVLALAMVDRSELRQAAKKVSDKIAASLPEP............................................................................................................................................................ 132
18 -10.300[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  10  1MSEYEKEIDE---LINDYDMLRVLKHFTIAHVDY-AKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTSIKRTEAKLKKSAEVHKHHTYYQINK---EAVLKEITPKLYVHHLKSADLQMLCSRKERKENPEACSSLLRMGLIDKCYDLTDL............................................................................................................... 148
19 -10.200[K] COG2345 Predicted transcriptional regulator  ali follow..  12  1MGDVVKGNDAHTGDGDTRR--KILLIL-LERAPVIASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPRQYRLTDK-----GRSIFGHEYDSLAAAALATLREVGGDD------------------------------------------AVRQFARKRIETIVEGITPADVTDQSIEDTAKSLVEAFSRHGYAATVDATRNGLCQHHCPISTVATE-LCEAEHQAVSELLGQHTQPLATIADGHGICTTNIPLT......... 223
20 -9.520[KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)  ali follow..  12  15......................LAEYIRIHQHSPSIRQMMQAMNLSPAPIQSRLEHLRTKGYIEWTEGKA---TIRVLQPIKQGVPVLGAIAAGGLI--EPFTDAVEHIDFSNFVLPAQTYALRVTGDSMIEDLITDGDLVFLRPVPNGTIVAARVDGYGNT...................................................................................................... 157
21 -9.490[KG] COG1349 Transcriptional regulators of sugar metabolism  ali follow..  14  3...............PRQRQAAILEHLQKQGK-CSVEELAQYFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKEES-KTLINTHKKALIAAAAVKYIHDMVPLLSRFSNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLF................................................................................................... 170
22 -9.400[K] COG4738 Predicted transcriptional regulator  ali follow..  11  18MGEVEYEMVELLRRLNINRPVALTLACLSKGDEISSQRIEMVSGLRQPEVSIAMRYLRENEWVDMREEKKNH-PVKLYKLTVQMETIIDIEENVIAESKTILQNIERLKSLS........................................................................................................................................................ 133
23 -9.300[K] COG5340 Predicted transcriptional regulator  ali follow..  13  1MSSTQETQTIRQGLST--RESRLLSHLAAEGHQISIDDVEATLEVAPNTAREIASRLTEKGWLDRLLPGRYLITTHEYLIASHVAEPMYIGYYSALSHHGLTEQVPRTVYVVTPTRAQSREIHTVTERKFFGYEPTSIEGTVVNVADLAKTLVGIRELATAMVAADDQACSWATVGEYLQRLDNGAATKRIVYLAD.................................................................... 223
24 -9.270[P] COG0735 Fe2+/Zn2+ uptake regulation proteins  ali follow..  16  4.............PQLTKNQSLVMGALAHSDGPMSAYTILDKLRDNPLQVYRALDKLLEYGLVHRLESLNAFVACSCPHEHEHDHGVTQVTEFHDEVIEDRLSTLVRAQEFKTEKTTIEIR............................................................................................................................................... 124

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.