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Query: [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKEFIMKFSLKSLLTIAAAASTLILAGCGEKAVDNNKVKIGVMAGAEAQVAEVAAKVAKEKYNLDVELVTFTDYVTPNAALDDGSIDANAFQHKPYLDKQIADRGYKLAIVGNTFVYPIAGYSKQIKSVDELQDGARIAVPNDPTNLGRSLLLLQQQGLLKLREDVGLLATVRDIVENPKKLEILELDAAQLPRSLDDVALSIINTTYASSINLTPEKDGIFVENKESPYVNILVAREANVNAENVQNFKKAYQTDEVAKAASEIFQGGAVKGWLast
1 -117.000[P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen  ali  100  1MNKEFIMKFSLKSLLTIAAAASTLILAGCGEKAVDNNKVKIGVMAGAEAQVAEVAAKVAKEKYNLDVELVTFTDYVTPNAALDDGSIDANAFQHKPYLDKQIADRGYKLAIVGNTFVYPIAGYSKQIKSVDELQDGARIAVPNDPTNLGRSLLLLQQQGLLKLREDVGLLATVRDIVENPKKLEILELDAAQLPRSLDDVALSIINTTYASSINLTPEKDGIFVENKESPYVNILVAREANVNAENVQNFKKAYQTDEVAKAASEIFQGGAVKGW 275
2 -22.500[P] COG4521 ABC-type taurine transport system, periplasmic component  ali follow..  16  1..............MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKISKPEDLI-GKRIAVPFISTTHYSLLAALKHWGI------------------KPGQVEIVNLQPPAIIAAWGDIDGAYVWAPAVNALEKDGKVLTDSEQVGGAPTLDVWVVRKDEKHPEVVKAFSKSAID................... 230
3 -17.600[K] COG3888 Predicted transcriptional regulator  ali follow..  11  42......LEEKGIIKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGAVAS--------GSGVYKNVNC-NCGKILTSESSSMMILAREFAKTRKISEIAIFKDPRRAIKDYESF-------------------KAEYIVIWEPYASKI--MGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKREDVIDIFAKSTS....... 280
4 -15.300[P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components  ali follow..  13  1MTEFFNQFSRRKFIFTAGASASAVFLKGCLEQAPEVTTVKLGYIPVESAPLIIAKEKGFFAKYGLNVELSKQASWGSARDNVEIGSAGGGIDGGQWQMP--KGNQKIPMYVLCQLITHGNGI-KSLFSKLKASPTPFTAAQTFPAVNQDFWIRWLAAGGI-----------------DPDADVKLLTVPSAQTVANMKTMDAFSTGDPWPFRIVKDKVGFMAALTAEKNHPEEYLAMRSDDQHPKATKALLKGLM--EAQQWCDNF......... 306
5 -14.900[P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component  ali follow..  11  1....MISRRSALVIAAGLSALALASCSGKSDAPAANNEVTFSILSTESTQ-WTPILKDMEKQTGLKVKPFFSSNYSSLIVAMGAKQTDLGWFSNQSGLEAVRRSNGEVFARTFDPSGTDIVPADSKIQSVQDLDKSLDFGIGDKKSTSGT----LAPMTYVFIPANKKPETCFKTVISANHQANLFAVAN-------GKLDASTNNSGLSKARGEGVTDKIRVIWESPTLPEDPLVWRK-DIDPVVKEKLRQFFEAEQQRGYLKRLSIGGFKPA. 283
6 -12.200[P] COG4150 ABC-type sulfate transport system, periplasmic component  ali follow..  13  1MKQN-SVKKNARNGLTHIALFSALILSGVTASATELLNSSYDVSRELFTALNPGFQAQWEQQNKLTIKQSHAGSSKQALAILQGLKADVVTYNQITDVQILHDRNNSSPFYSTMAFLVRKG--PKNIRNWDDLREDVKLVFPNPKTSGN-TYLAAWGATQLAGGDEAKTRDWMKRFLKNVEVFDTGGRGATTTFVERGLGDVLISFESEVNNIRKEYGSDQYEVIVPPVPVAWVDKNVEKNGTEKAAKAYLNYLYSPPAQQVITR.......... 289
7 -11.800[H] COG2998 ABC-type tungstate transport system, permease component  ali follow..  12  1......MEFTMKKTT-FTLAAASLILVSYSASSADDARIRLATTTSYDSGLLDYLLPKFEQDTGYKVDVI-ATGTGKALKMGENGDVDLVMTAEASFVEAGFGVLPRKLMYNDFVVVGPES--PAKIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMG----PTLNMASEMQAYTLTDRGTWLAYNNKLALKILFEGDEQLFNPYQVIIVERYPTTQYHAAKVFSDWLVNPKGQQLINE-FKVNGQQLF 268
8 -11.700[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components  ali follow..  12  1.........MLKQITAMTAGLLMTIGVAAAAEPESCKTVRFSDVGWTDITSTTAVASTILEALGYAPQSKLLSIPVT--ASMKNKDIDVYLGDWQPSMEADRKPEDKSIEVIGPNLTAKYTFAVPKYVADAGVKDISDLQKFPDKFGRK----------IYGIEPGNNGNRMILDINKGDFGLTGWELVESSEQGMLAEVERATKDDQWIVFLGWAPH-QIDYLSGADAYFIYTNIRAGYAQECPNVARFVTNLRKDAAADWLKA--HPEAVAPW 290
9 -11.600[P] COG1613 ABC-type sulfate transport system, periplasmic component  ali follow..  13  1......MSSNSLAGIVKLALVVGSLQLGSIGLALADTTILNVSYDPTRKEFNAAFAEKWQADTGETVTIQT-GSGKQARSVIDGLEADVVTLALEADIDAIAKESGKIPADWKSRFENNSAPYTKAIKDWGDLREDVQVITPNPKTSGGARWNFLAAWAWARAANNGDDAKAVAQLFKHVPVLDTGARGATTTFVQRGLGDVLLAWENEAYLSLEELGPDNFDIIKAEPPVALVDGNVDSKGTRKVAEAYLDYLYSDVGQKIAAK.......... 286
10 -11.500[M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  ali follow..  12  1......MTI------SKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMILQVLESHGVKTVNKQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKTPAPANNTWTIAIRQDIAEK-NKLSSLADLSRYLKEGGTFKLAASAEFIERADALP-GDTAVTIKAAAQQTSGVNAAMA-YGTDGPVAALGLQTLSDPKGPIYAPAPVVRESVLQADWLQPVFASLDEKTLQQL............. 279
11 -10.700[P] COG1840 ABC-type Fe3+ transport system, periplasmic component  ali follow..  9  7VRRLIQTQTMEEIMRLTIISSLLLAGTTLLGVPAHAAG-DLNLICAADVVICEQMKGDFEKTHDIKVNMVRMSSGEAYAKIRAEARTDLLQAASENLTLEYKSKMLDQLQDWAKNQAESAGGYNTDIKCWADLLA-GEIQIA-NPNSSGTAYTAL--ASLVQIMGEDQAFDYLKKLNGNISQYTKSGSAPVKAAAR-GETAVGIVFMHDAVAQTAEGFPKSVAPCEGTGYEIGSMSIVKGARNLENAKTWYDWALQPDVQSRMKDA......... 305
12 -9.510[R] COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain  ali follow..  13  1......MKK-----------IITLFGACALAFSMANADVNL-YGPGGPHTALKDIANKYSEKTGVKVNV-NFGPQATWFEKAKKDADILFGASDQSALAIASDSKIKPLYFREAIILTQKG--PLKIKGLKDLNKKVRIVVPEGAGKSNTS-----GTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWIT---WIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLSSKEAKEIFKK.......... 245
13 -9.460[R] COG2358 TRAP-type uncharacterized transport system, periplasmic component  ali follow..  13  1......MSLSRRFG--LFTLAATVTFSTSVFAAPTFINILTGGTSGVYYPIGVGLSQIYGHDQGAKTSVQATKASVENLNLLQAGRGELALALGDSVADAWNKAPLKKLRAIGNTYPNYIQVVASQASGIKTLADGKRISVAPKSGTELNARAIFKAAG---LSYEDMGKVEYLPYAESVELIKNRQLDATLQSSAIPADVVAKIDSPAYHAASIPAGTYDGQEQDVPTVAIDNILVSHSGVSDELAYQMTKLMFDN.................. 276
14 -9.130[S] COG4808 Uncharacterized protein conserved in bacteria  ali follow..  21  2...EFYMKAFNKLFSLVVASVLVFSLAGCGDKEESETKIQFASIGATTKEDAAKTLEPLSAKAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGIT..................................................................................................................................................................... 140
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24