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Query: [S] COG1633 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSAYKETIEEVRNLKGIEEAIALAIDREKEAREFYLQQAGLMENPKFKELYEELAAEEMKHLGYLENYRDKKELPEISTEVPSGQSFSPEFDASRTKVGEITLGDAGILLAAMRHERKSEDFYSEMAKRVEDETQKKFFEMLSRYERGHYEVIDSYLEYITQFRMQTLast
1 -71.600[S] COG1633 Uncharacterized conserved protein  ali  100  1MKSAYKETIEEVRNLKGIEEAIALAIDREKEAREFYLQQAGLMENPKFKELYEELAAEEMKHLGYLENYRDKKELPEISTEVPSGQSFSPEFDASRTKVGEITLGDAGILLAAMRHERKSEDFYSEMAKRVEDETQKKFFEMLSRYERGHYEVIDSYLEYITQFRMQT 168
2 -45.200[S] COG4902 Uncharacterized protein conserved in archaea  ali follow..  18  47..............SDEEANSLLYMIEEEKLARDVYLKLYNETG----LIIFDRIAQSEQRHMDAVLMLIEKYNLTAPDTLNEIGVFENEELQNLYNEVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEDIKVVFENLMDGSKNHLRAFTKVLADNY...... 191
3 -31.100[R] COG2406 Protein distantly related to bacterial ferritins  ali follow..  13  15.............DVDKLLELLIKNAAAELTTYYYYTILRANLIGETIKEIAEVARIEDRNHFEALVPRIYELGGKLPDC-----MKEFHDLSACPPARLPDKPTVQEILRVLVAAERCAVKGYTEICNMTADHRTYELSLAILNEEIEHESWFSEFLGE........ 161
4 -27.600[P] COG2193 Bacterioferritin (cytochrome b1)  ali follow..  18  1...........MKGDTKVIERLNEALFLELGAVNQYWLHYRLLNDTKLAKKERAESIEEMQHADKIIDRIIFLEGHPNLQTL---------------APLRIGQNVKEVLEADLAGEYDARTSYKKSCSEAGDYVSMKLFEALLIDEEGHIDFLETQLELLGK..... 143
5 -26.900[P] COG3546 Mn-containing catalase  ali follow..  14  35............................ELAAACRYFTQGLSDDDAGRREMLMDIATEELSHLEIIGSLVGMLNKGAKGELAEGTENEAELYRSLTQAYIDTIGEVTADLRSNIAAEARAKIIYERLINLTDDPGVKDTLSFLMTREVAHQLSFEKALYSIRN..... 197
6 -26.000[S] COG1814 Uncharacterized membrane protein  ali follow..  15  3...........TTSNSKLVEVARKAALDEYKEYVTYSVLARVERNKARRAVLERLAEQEREHFQFWNKFAGVKPPAWRFR-----------LYAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAEPLLSGPD--REALRRIIKDEEEHERALIAQLDE........ 138
7 -23.800[C] COG1592 Rubrerythrin  ali follow..  15  2................GTLENLVKAFIGESMARNRYTFYAKVAKDVFIQRVFLETAENEKEHAENLLKFIQQLRGDNAAIKVEAEAP-------------LVWGTTVENLKAAIEGEHEMYPQFADEAEKEGFKDIADRLRAIGKAEEHHERRYRRLLAEVEN..... 142
8 -23.200[S] COG3461 Uncharacterized conserved protein  ali follow..  19  1MADQYHEPVSELTGKDRDFVRALNSLKEEIEAVAWYHQRVVTTKDETVRKILEHNRDEEMEHAAMLLEWLRRNMPG............................................................................................ 76
9 -17.900[H] COG2941 Ubiquinone biosynthesis protein COQ7  ali follow..  14  38............KDSNILDSVIRVDQAGELGANQIYQHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTFLR-----------------AGTALLGTKAAMACTEAVETVIGGHYNDQLRETEFKEIRSHLAEFRDDELEHLN................ 181
10 -17.900[R] KOG4061 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5  ali follow..  14  38............KDSNILDSVIRVDQAGELGANQIYQHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTFLR-----------------AGTALLGTKAAMACTEAVETVIGGHYNDQLRETEFKEIRSHLAEFRDDELEHLN................ 181
11 -17.900[FJ] COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA  ali follow..  13  94...............AFRQGPEPDFVALHKQISKSAMPQTDDPWGRQLIDRMVLLIKEELHHFWQVREVMQARN------PYVKITASRYAKGMLKAVRTHEPLTLIDKLICGAYIEARSCERFAALAPWL-DEDLQTFYLSLLRSEARHYQDYLALAQQISAED... 237
12 -17.700[P] COG1528 Ferritin-like protein  ali follow..  15  4...............QAIAEKLNEQINLEFYSSNVYLQMSAWCAHEGAAAFLLRHADEEMEHMQKLFNYVSETSGMPLLGKIEAPKND---------------KTLKEIFEITLEHEKSKINELVEVTFAHKDYSTFNFLQWYVAEQHEEEMLFNSIIDKFNL..... 143
13 -17.500[S] COG2833 Uncharacterized protein conserved in bacteria  ali follow..  11  76...........LNTEHGRIALMHALAHIELNAIDLALDIVARFAVKSFFDGWMKVADDEARHFTLLRNRLKSLGADYGDMPAHDG----------QSAHQTRNDLEARLAVVPLILEARGLDVTPSLLEETGDHETAAILNIIYNDEKTHVAVGAKWFRFFCA..... 226
14 -16.900[S] COG3396 Uncharacterized conserved protein  ali follow..  9  29...............KTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPT----LSWADIGVIGWLVDGAAIVNQVALCRTSYGP-YARAMVKICKEESFHQRQGFEACMALAQ..... 171
15 -15.800[M] COG5577 Spore coat protein  ali follow..  10  4................ASHELHDLLIVSCVNSITNMAMFRNMVQDQDLKNILNSHFPAHIQDYNMKVEFVKKAQGSNQKLNVPNLNVMANSFPPIAPRTDVQKMNDREIATAYLLTLKRAGREYAWSAMEMSNPEIRQFLKDAFTMSCNHAYDVWQWMVQ........ 157
16 -15.800[S] COG3685 Uncharacterized protein conserved in bacteria  ali follow..  17  1..............MATANEHLRDAHAMEEQAITMLTSQSSRLENPELKTRIDRHLQETKDQAAMLERCLERLDGGTSSIKDISGKIVAFGQGLSGLFVSDEVVKGTLASYTFEHMEIASYRILIAAAEQAGDQETKRVCESILQQEIAMAEWLAQNAGEITRKF... 156
17 -13.400[R] COG3687 Predicted metal-dependent hydrolase  ali follow..  9  152............................EEFFVRVFKKTLPLIKDDQLRLDVQGFIGQEAMHSQAHSGVVDHFDAQTAFTNQIRWLFEKLLGESPRRSPRRQYSWLLEQVSFIAAIEHYTAVMGEWILNSPQDPVMLDMLRWHGAEEVEHKAVAFDTMKHL....... 294
18 -12.800[S] COG3544 Uncharacterized protein conserved in bacteria  ali follow..  8  90.....................IDAMIPHHQGAVKMANVAQQKSKRPEIKNLADEIIKAQNQEITQMKQWRTAAYDAKMGHMMEMSSEQMQAMMMDIDLGAADAEFDLRFINAMIPHHEAAVVMAKDALQKSQRPEIKNLAQEIIKAQDTEINQMKQWRKT........ 238
19 -12.200[S] COG3652 Predicted outer membrane protein  ali follow..  10  51..................QTFVSEASAAGVAEIEAGKMALEKSTAADVKVFAKQMIDDHGKVNAELRSLAERKKLEVEDDASLTDKAKATLLDLRDAS-------DPAYANNQVAAHEKAVELFTQAADNLTDPELQAFAKTHLPALKHHLEMARALAKAHPSK.... 190
20 -12.100[F] KOG1567 Ribonucleotide reductase, beta subunit  ali follow..  13  84............DEKYFISHILAFFAASDG-NENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKRVVAFAAVE-GSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKP... 246
21 -9.330[F] COG0208 Ribonucleotide reductase, beta subunit  ali follow..  12  81............HEKHIFISNLKYQTLLDS-GRSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKTVSLKELKKKLYLCLMSVNALEYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNG.... 268
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.