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Query: [G] COG1653 ABC-type sugar transport system, periplasmic component, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFNNSIHKVSICIALTLTFSANAMAVTEIPFWHSMEGELGKEVDSIADRFNQSQPDYKIVPVYKGNYEQSLAAGIAAFRSGKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDESVFVPTVAGYYTDSKTGRLLSQPFNSSTPVLYYNKEAFKKAGLDPEQPPKTWQELAADTAKLRAAGSSCGYASGWQGWIQIENFSAWHGQPIASRNNGFDGTDAVLEFNKPLQVKHIQLLSDMNKKGDFTYFGRKDESTSKFYNGDCAITTASSGSLASIRHYAKFNFGVGMMPYDADAKNAPQNAIIGGASLWVMDGKDKETYKGVAEFLQYLVKPEIAAEWHQKTGYLPITTAAYELTKQQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRTVVDEELEAVWTAKKTPQAALDNSVKRGDVLLRRFEQANKLast
1 -121.000[G] COG1653 ABC-type sugar transport system, periplasmic component  ali  100  1MFNNSIHKVSICIALTLTFSANAMAVTEIPFWHSMEGELGKEVDSIADRFNQSQPDYKIVPVYKGNYEQSLAAGIAAFRSGKAPAILQVYEVGTATMMASKAIKPVYQVFKDANIDFDESVFVPTVAGYYTDSKTGRLLSQPFNSSTPVLYYNKEAFKKAGLDPEQPPKTWQELAADTAKLRAAGSSCGYASGWQGWIQIENFSAWHGQPIASRNNGFDGTDAVLEFNKPLQVKHIQLLSDMNKKGDFTYFGRKDESTSKFYNGDCAITTASSGSLASIRHYAKFNFGVGMMPYDADAKNAPQNAIIGGASLWVMDGKDKETYKGVAEFLQYLVKPEIAAEWHQKTGYLPITTAAYELTKQQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRTVVDEELEAVWTAKKTPQAALDNSVKRGDVLLRRFEQANK 439
2 -67.900[G] COG2182 Maltose-binding periplasmic proteins/domains  ali follow..  15  1MKIKTGARILALSALTTMMFSAKIEEGKLVIWI----NGDKGYNGLAEVGKKFEKDTGIKVTVEH-PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYP--------FTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN-------PPKTWEEIPALDKELKAKGK-------SALMFNLQEPYFTWPLIAADGGYAFKYENKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT-SKVNYGVTVLP---TFKGQPSKPFVGVLSAGI--NAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEE----LAKDPRIAATMENAQKGEIMPNIP-----QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK.......... 396
3 -28.900[R] COG4134 ABC-type uncharacterized transport system, periplasmic component  ali follow..  8  1MMRHCGWLLGLLSLFSLATHAAKGQTVWFNAWGG-DTAINRYLDWVSGEMKTHY-AINLKIVRLADAADAVKRIQTEAAAGRKTDLLWVNGENFRTLKEANLLQTDWA---------NWRYVDTQLPVREDFSVPTEGAESPWGGAQLTFIARRDVTPQ-------PPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALNEAPNDATFARVT---APLWQYLDALHPYLWREGKDFPPSPARMDALLKAGTFRLSLTFNPAHAQQKIASG------DLPASSYSFGFREGMIGNVHFVTIPANAN--ASAAXKVVANFLLSPDAQLRKADPAGDPSVLDPQKLPDGQRETLQSRM...................................................................... 359
4 -24.000[H] COG4143 ABC-type thiamine transport system, periplasmic component  ali follow..  14  1.....MLKKYLPLLLLCAAPAFAKPVLTVYTYDSFAADW-GPGPAVKKAFEADC-NCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLEAATQTKLFAKSGVANEAVKVPGGWKN-----------------TFVPFDYGYFAFVYDKSKLKN-------PPKSLKELVESDQK---------------------------RVIYQDPRTSTPGLGLLLWMRKVYGDNAPQAWQKL-AAKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHIIEEKKDNYAAANF--------SEGHYLQVEVAARTVAS--KQPELAEKFLKFMVSPAFQNAIPTGNWMYPVADVALPAG................................................................................ 292
5 -23.600[E] COG0687 Spermidine/putrescine-binding periplasmic protein  ali follow..  15  2MKRFGKTLLALTLAGSVAGMAQAADNKVLHVWSDYIA------PDTLEKFTKET-GIKVVYDVYDSNEVLEAKLLA---GKSGYDVVVPSNSFLAKQIKAGVYQKLDK---------NWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAA-FGDNAPVDSWDLVFKPENIQKLKQCGVSFLD--------SPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYF----------HSSKYISDLANGNICVAIGYSGDIYQAKSRAE---------EAKNKVTVKYNIPKEGAGSFF---KDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPL--VSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSG.................................. 366
6 -21.100[P] COG1840 ABC-type Fe3+ transport system, periplasmic component  ali follow..  12  16MEEIMRLTIISSLLLAGTTLVPAHAAGDLNLI---CAADVVICEQMKGDFEKTH-DIKVNMVRMSS-GEAYAKIRAEARNPKTDLWWAGTGDPHLQAASENLTLEYKS-----------KMLDQLQDWAKNQAESAGYKTVGVYAGALGWGYNTDIFKKKGYK---EPKCWADLLALKGEIQIANPNSSGT----------AYTALASLVQIMGED-----------------QAFDYLKKL-NGNISQYTKSGSAPVKAAARGETAVGIVFMHDAVAQTAE-GFPVKSV-AP--------CEGTGYEIGSMSIVKGA--RNLENAKTWYDWALQPDVQSRMKDAKSFLPSNKTAEIPKEAPRF........................................................................... 325
7 -19.400[P] COG1613 ABC-type sulfate transport system, periplasmic component  ali follow..  13  1MSSNSLAGIVKLALVVGSSIGLALADTTILNVSY--DPTRELYKEFNAAFAEKWQADTGETVTIQTSHGGSGKQARSVIDGLEADVVTLALEADIDAIAKESGKIPADWKSRFE------------------------NNSAPYTSTIVFLVRKGNPKA--------IKDWGDLVREDVQVITPNPKTSGGARW---------------------NFLAAWAWARAANNGDDAKAQEYVAQLFKHVPVLDTGARGATTTFVQRGLGDVLLAWENEAYLSLEELGPDNFDIVTPSISIKAEPPVALVDG---------DSKGTRKVAEAYLDYLYSDVGQKIAAKH-YYRPFKPELADPKDTARF........................................................................... 305
8 -15.000[H] COG2998 ABC-type tungstate transport system, permease component  ali follow..  11  1MEKKTTFTLAAASLILVSYSASSADDARIRLATTTSTYDSGLLDYLLPKFEQDT-GYKVDVIATGT-----GKALKMGENGDVDLVMTHAPKAEASFVEAGFGV-----------------------------------------LPRKLMYNDFVV----VGPESDPAKIADEKNIAKVFENIAKSGAVFISRGD-------------------------------DSGTHKKELGIWAQNKIEPNFGSIGQGMGPTLNMASEMQAYTLTDRGTWLAYNNKLALKILF---------EGDEQLFNPYQVIIVNPERYPTTQYHAAKVFSDWLVNPKGQQLINE---FVANADK..................................................................................... 274
9 -15.000[P] COG4150 ABC-type sulfate transport system, periplasmic component  ali follow..  13  1MKQNSVGLTHIALFSALILSGVTASATELLNSSY--DVSRELFTALNPGFQAQGDKLTIKQSHAGS-----SKQALAILQGLKADVVTYNQIDVQILHDRGNLIPAD----------------------------------ARLPNNSSPFYSTMAFLVRKGNPKNI-RNWDDLVREDVKLVFPNPKTSGNGRY---------------------TYLAAWGATQLADGGDEAKTRDWMKRFLKNVEVFDTGGRGATTTFVERGLGDVLISFESEVNNIRKEYGSDQYEVIVPPVDILAEFPVAWVDKNVE-------KNGTEKAAKAYLNYLYSPPAQQVITR-FNYRVYDKAAME.................................................................................. 301
10 -9.550[R] COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain  ali follow..  12  1MKK-------IITLFGACALAFSMANADVNLY---PGGPHTALKDIANKYSE-KTGVKVNVNFGPQ-----ATWFEKAKKDADILFGASDQSALAIASDFGKDFNVS--------------------------------------KIKPLYFREAII----LTQKGNPLKIKGLKD----LANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQ-------------DQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVI-------------------------AKEGASKETQDFIAYLSSKEAKEIF-KKYGW........................................................................................... 248
11 -9.260[P] COG0226 ABC-type phosphate transport system, periplasmic component  ali follow..  10  10NNRIPVSITVLTLAMSLAACGGQQGSDN-SLTGAGASFPAPLYASWFTDLNKKYPNLQINYQSVGSGAGVEQFIQGTVDFGASD-------------------VAMKD---------------------EIQKVQRGVLLLPVTAGGIVLAYNLPGVTELNLPRVV--KTWDALPSQPITVVYRSDGSGTTGVFTKHLAAVSPEWKSKV---GEGKSVSWPVGVGGKGNEGVTAQIKQTQGAIGYIEYGYAKQNNISYATLENKAGKFVKYNDESASQTLAAIQLPENLRAFVPDPDGDGS----PIVSFSWIMANYPDPVKAKAMEAAIEYALTEGQKI--SGELGYIPLPQAVVQK................................................................................. 367
12 -9.050[P] COG0725 ABC-type molybdate transport system, periplasmic component  ali follow..  15  1MAHSWLRLVAGATLSFVIAGHALADEGKITV--FAAASLTNAMQDIAAEYKK-EKNVDVVSSFASS-----STLARQIEAGAPADLISADQKWMDYAADKKAVDTTTRVVAPKASEQKPFTIDNKTDWIRLLNGGRLAVGDP--QHVPAGIYAKEALQKLGA--------WQTLEP---KLAPGED-------------------------------------------------VRGALALVERNEA----------------PLGIVYGSDAVASKGVNV------VATFPEDSHKKVEYPIAIVEGH-----------KNATVSAFYDYLKGPQASAIF-KRYGF........................................................................................... 254
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.