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Query: [E] COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFDLast
1 -92.900[E] COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family  ali  100  1MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD 331
2 -45.200[OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase  ali follow..  18  2...................................................KRPLIIGVGGPVGAGKTMLIERLTRYLSTKGYSMAAITNDIYTKEDARILLNTSVLPADRIAGVETGGCPHTAIREDASMNFAAIEEM-CDKHPDLQLLFLESGGDNLSATFSPDLVDFSIYIIDVAQGEKIPRKGGQGMIKSDLFIINKVDLAPYVGANVEVMK-------ADTLKSRGNKDFFVTNLKTDEGLKSVADWIEKRLQLALLE.................................................................... 205
3 -15.300[R] COG3596 Predicted GTPase  ali follow..  15  21....................................LWVSERILQQINQLTHYEPVIGIMGKTGAGKSSLCNALF------AGEVSPVS----------------------------------------DVAACTRDPLRRLQIGEHFMTIVDLPGVGESG-EQLPRLDLILWLIKADDRHFYRQVIGEAYRHKMLFVISQSDKSGGNILSTEQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLRVMAERMIKCLSSPVVALLQHPFRTWVAREQARDDFGETVDTILDTVSTFPLIPAPVRTIIQAVRSSVVSVARAVWDFFF..... 289
4 -14.300[R] KOG1533 Predicted GTPase  ali follow..  14  1.....................MQMNLNEKKQLLRVRVYATSEKGENLGSTHWTMYGVLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANAYAPDVNITEMITVNDVMDRLGL--------GPNGALGANCNWLLQKIEANHKKYLIIDC---GQLELYKSEGELWKVIRFLEKSGVRLCAL----MEMPQVNCLSKADLDLLNEVPGLEKYRKLNEAICGVISDFDLVSFVPLAVENKESMMKVIQMVDAANGFSLTEQGDIRELILNSKA....................................................... 300
5 -13.900[K] KOG1534 Putative transcription factor FET5  ali follow..  15  8..........................................................VCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAEWEPTVDIRDLISIDDVMEELDY--------GPNGGLMENLDWLNEEIGDYDEDYLIFDM---GQIEL-AVYLLESQFLVDRTKFFAGVLSAMSAMMEVPHINLLSKMDLLKDNNNITKAELKRFLNTDPLLLTGE-MVNFLPLESGNEESVSRVLSYIDDATQWYEDQEPKDPDRFEADDL....................................................... 272
6 -13.600[D] COG3640 CO dehydrogenase maturation factor  ali follow..  17  8.......................................................KLIISGRGGSGKSTLVTLIAHTLKEQKKRVLVVDSDESNI---SGILGESLSQEFVCWVGSLGLMQIGKIDHAM-MGAVTRDFLNHVRLEEDQWVLVDTAGVEHFGRGIVEGADAVVMVVDPSSDAVLLAEK--AAKLTH-VILNKIDEETEPILTELLTSE.................................................................................................................. 220
7 -13.400[L] KOG1532 GTPase XAB1, interacts with DNA repair protein XPA  ali follow..  15  10......................QDIVEESQKLVDSLDKLRVSAASSSSNFKKKPIIIIVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVPFGANIDIRDTVKYKEVMKQYNL--------GPNGGILTSLNLFATKFDADQLDYVLVDT---GQIEI-VTYVVDTPRSSSPITMSNMLYACSILYTRLPLVLAFNKTDVADHKFALEWMEDFEVFQAAIQSDNS--NIRSVGVSAISGAGMDGFFKAIEASAEEYMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLNTGLKDRDA.................. 340
8 -12.900[R] KOG2486 Predicted GTPase  ali follow..  13  138........................................................FALVGRSNVGKSSLLNSLVRR-----KRLALTSKKP----------GKTQCINHFRINDKWY--------------------------------LVDLPGYGYASAPFLNRSTLVSVFLLVDASIPVKPIDLEYASWLGTLIFTKCDKKKKKNGGKKPEANIKEFQDLIQGFFETTPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH.................................................................... 318
9 -12.400[R] COG1084 Predicted GTPase  ali follow..  15  124.................RREAFGRISSVIKRIEGDFLDFAKNKLRNMPTVDLDAFTVVIAGFPNVGKSTLLR---------------------------TLTGAEPEVADY---------PFTTKGIQIGH----------LERKWKRIQVIDTPGL-QAMVALENIADVIMFIFDASET-SLYLGIRSVFDIPVVTVFNKMDLAENVKYLEEYINMVE--------------DPLKVSAFEGRGVSKIIKKLEGLYEKETRE.................................................................... 331
10 -12.200[R] KOG1490 GTP-binding protein CRFG/NOG1 (ODN superfamily)  ali follow..  13  113YVKLLKYGDSLYRCKCLKVAALGRMCTVLKRITPSLAYLIRQHMARLPSIDPNTRTVLICGYPNVGKSSFMNKVTR------------------------------------ADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG----ILDRPFEDRNIIELAHLRAAVLFFLDISGSALFHSIKSLFMNKPLVIVCNKTDLMPMENISEEDRKLIEEMKMKTAMGASEEQVLLKMSTLTDEGVMSVKNAACERLLDQRVEAKMKSKKINDHLNRF..................................................... 370
11 -11.900[E] COG4917 Ethanolamine utilization protein  ali follow..  15  3.......................................................RIAFVGSVGAGKTTLFN---------------------------ALQGNYTLARKTQ------------------------------AVEFNDKGDIDTPGE--YHALITTLQDVDMLIYVHGANDPESRLPAGLLDIG-IAVISKTDMPDADVAATRKL-----------LETGFEEPMFELNSHDPQSVQQLVDYLASLTK......................................................................... 147
12 -11.700[U] COG0552 Signal recognition particle GTPase  ali follow..  13  73......IDELKKEVKRRNIQDPKEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTAGAIEQLEVWGERTGVPVIKQTAGS--------------AAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKAPHEVLLALDATTGQNAMAQAKEFSKATNVIALTKLDGTAKGGIVLAIRNELHI............................................................................................................... 293
13 -11.200[R] COG1159 GTPase  ali follow..  11  1..............................................MSTDKTYCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKAQT-----------------------------TRHRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDILAVNKVDNVQEKVDLLPHLQFLASQMNFLD--------IVPISAETGMNVDTIAGIVRKHLPEAIHHFPEDYITDRSQRFMASEIIREKLMRFLGAEL..................................... 210
14 -11.100[D] COG0455 ATPases involved in chromosome partitioning  ali follow..  17  25....................................YDQASGLRRLTQPSVTKVISV-TGGKGGVGKSNVTLGMAICMAKQGKKVMVLDAD-RPKRNLGHVLAGECELKDAIVEGPHGIRIIPATSGTQSMTELSHAQHVGL-EDEMDILLIDTAGISDMVVSFSRAAQDVVVVVCDSITDAYALIKLLSKEHQV-IVANMV................................................................................................................................. 213
15 -10.600[N] COG1419 Flagellar GTP-binding protein  ali follow..  15  113......LSKILYGMEKQEPEIRYKLIDFLKMKFGDLDPNSNETFKILSEQDFKNAKVLFVGTTGVGKTTSLAKLAARFKDEKKRVAILTLDT---------IAAAEQLKIYADIMDIPMKIAYTPKEA---------EYEMMALKDYDIVLVDTAGRSHQNSEAVKPNITFLVLSMNYKLDDMKRIVERFSAVKTHIILTKMD................................................................................................................................ 317
16 -10.600[J] KOG1191 Mitochondrial GTPase  ali follow..  14  289.....GFSSLVKSLRAQCIELLTEIEARLDFEDEMPPLDIESVINKITSMSQSGLQIAIVGRPNVGKSSLLNAWS------KSERAIVTEVAGTTR-------DVVEAN-----------------TVRGVP------ITLLDTAGI---IVEKIGVERSETAAKV-ADVIIMAV-----SAVEGWTEEDTELLRILVMNKIDCAPPGSCDQLEDQRKKEEV---------FHKSVFTSAVTGQGIEELEDAILEILGLTGGHQWTVNQRQCEQLVRTKEALVRLREAIEDEIPIDFWTIELREAALSLAQISGQDVSEEVLSSIFAKF.. 609
17 -10.600[D] COG2894 Septum formation inhibitor-activating ATPase  ali follow..  17  2.....................................................ARIIVVTGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDRRVVYDFVNVIQGDATLNQALIKENLYILPASQTRDKDALTEGVAKVLDDLKAMDFEFIVCDSAGIETGALMALYFADEAIITTNPE......................................................................................................................................................... 146
18 -10.500[TU] KOG1954 Endocytosis/signaling protein EHD1  ali follow..  21  44..SKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDFDAK----MILLVGQYSTGKTTFIR----YLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSNALVVDAKKQFRALSG---FGNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQFAERVDRIILLFDADISDEFKRCIEALAGNEDRIVLNKSDMVDHQQLMRVYGALM................................................................................................................. 271
19 -10.500[R] COG4240 Predicted kinase  ali follow..  14  78...........................................IAAQHQQLKRPFIQGILGSQGTGKTTMSLVIQLILQHLGYRTLSLSLD-------DLYKTYSDRLVLLQQDPRLIWRGPPGTHDIDLGLNVLEQIRQ-VIVPRFDKSAHAGAG-DRTKPDVITGVD---ILIFEGWFVGVRPIDPSLFNFPPSPILTDEDKAFARDMNLRLNHYLPLWEKLD.......................................................................................................... 251
20 -10.400[R] KOG2878 Predicted kinase  ali follow..  19  11.......................................ILKFLEKQPKPEGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKFSLD--------DFYLTHAEQVELAKNNPN--PLVQHRGLAG-----THDVTFLNN-------VLNAFVKGSDEEVSIPFYDKSK-----GYGDRGDESQWKKANPTTYVIFE................................................................................................................................... 149
21 -10.300[U] KOG0781 Signal recognition particle receptor, alpha subunit  ali follow..  19  369......AEKLCESVEA---SLEGKKLSSFTRISSTVQAAMEDALVRILKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACD---TFRSGAV--EQLRTHARRLQIPIFEKGYEKDP-----AVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALDLVLFVGEALVGDQLSKFNQKLSDLSDGILLTKFDTIDDK........................................................................................................................... 593
22 -10.200[R] COG1341 Predicted GTPase or GTP-binding protein  ali follow..  17  1.....................MMRMASNKAMFTNDVPQDRLLAVEKIESLRKPAKVM-IIGDVDTGKTTLTIYLANELLSRGFRVAIIDSDIGQKISLAFVDSHFTSLDDLKAFSHYFIGTITPNQYFGEMVVGVMKLSELAMKFS-DVVLIDTTG------------------MIYGSGVELKRMKIEAVKPNLILALERNN................................................................................................................................ 169
23 -10.100[R] COG0218 Predicted GTPase  ali follow..  19  28........................................................IALAGRSNVGKSSFINTMLNR-----KNLARTSGKP----------GKTQLLNFFNIDDKMRFVDVPG-----GYARVSKK-----EREKWGCMIEEYLTTRENLRAVVSLVDL-----DPSADDVQMYEFLKYYEIPVIIVATKADKIPRGKWNKHESAIKKKLNFDP------SDDFILFSSVSKAGMDEAWDAILE............................................................................ 193
24 -10.100[F] COG1618 Predicted nucleotide kinase  ali follow..  17  2.............................................RIEGKEKTMLRIAVTGSPGVGKSTVVAKTAEKL-AEKPGFKIGGIRTAEIRKEGHREG--FSIRDLATGKTGILSHVKGSGPRLGKYHVNLDDLEVRNALACDLVVIDEIGPMELISQVEEVLESDKPVLAVLHHSSRHPLAQRFRKGFEVLTVDKGNRDELEKITNRFLRKLG................................................................................................................ 184
25 -10.100[F] COG0194 Guanylate kinase  ali follow..  17  42..................................................KERGLLIVLSGPSGVGKGTVRQAIFSQEDTKEYSISVTTRSPREGEVNGV---TRDEFEQM-IADNKLLEWAEYVGNYYGTPVDYVEQTL---QDGKDVFLIEVQGALQVR---NAFPEGLFIFLAPPSLSELKNMKAAKAEIEDYVVEN----DNVETACDKIKAIVLAEHLKRERVAPRYKKMLE.............................................................................................. 242
26 -10.100[R] COG0523 Putative GTPases (G3E family)  ali follow..  17  9..........................................................LTGFLGAGKTTLLRHILNE--QHGFKIAVIENE-------GEVSVDDQLIGDRATQIKTLTNGCICCTRSNELEDALLDLLDSRDRGDFDRLVIECTGMADSHDVLCERYLLDGVIALVDAVHANEQMNQ--IGYADRILLTKTDVAGDSEKLRERLARIN................................................................................................................ 177
27 -10.000[R] KOG0410 Predicted GTP binding protein  ali follow..  14  269...........EKQIEVDKRILRTQIGVLKKELESVRK--HRKQYRSRRVAIPVPVVSLVGYTNAGKSTLLNQLTGANVLAENRL-FATLDPTTQNGKEFLLTDTV-----------FIQKLPTT-------------------------LVAAFRATLEEIAESSLLVHVVDISHPLAEQQIEAVEKVMSELD-LVVWNKVDRVDDPQKVKLEAEE--------------TGDTICISALTGEGLDDFCNAVHE............................................................................ 470
28 -9.990[P] COG1348 Nitrogenase subunit NifH (ATPase)  ali follow..  19  3.......................................................QVAIYGKGGIGKSTTTQNLTSGLAELGKKIMVVGCDPKADSTRLREEGEDVDLDTIMKTGFGNIKCVESGGPEPGVGRGIITSINMLEQLGLDYVFYDVLDVVCGGFAMEGKAKEIYIVASGEM-YAANNISKGISKFAN-IICNSRKVKNEKELLEAFAKELGT............................................................................................................... 202
29 -9.910[U] KOG0780 Signal recognition particle, subunit Srp54  ali follow..  17  92............................................PAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCAD---TFRAGAF--DQLKQNATKAKIPFYGSYTESD------VKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMDLVIFVMDSSIGQAAFEQAEAFKETVSVVIITKMDGHAKGGGALSAVAATKS-------------PVIFI------GTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPK-------------DLQNELVENLSQGNFTLRSMYDQF.......... 337
30 -9.750[H] COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein  ali follow..  18  3.......................................................IFGITGWKNSGKTTLTEKLVAELVRRGWKVSTVDIDKPGA--------DSFRHRQAGATEVAIVSGNRWA------EDEPPLESILSRLAPCDIVLVE--GYKREKIETRRLEAKDRTPLSAGDPNIVAIAADFAVTDKSLPAFDLDDVKSIVDFIERTTGLVA................................................................................................................ 167
31 -9.610[R] COG1160 Predicted GTPases  ali follow..  19  5.......................................................VVALVGRPNVGKSTLFNRLT------RTRDALVADFP-------------------------------------GLTRDRKYGH--AHIAGYDFIVIDTGGIDGTEEGVIDEADIVLFLV-----DARAGLTAADIGIANVVVANKTDGIDADSHCAEFYQL----------------EIEQIAASQGRGVTQLMEQVLA............................................................................ 162
32 -9.580[R] COG5258 GTPase  ali follow..  13  55.LPDEELVKALETLREMARRVGASLYILRVSEGIRGKVAEVLLRAVSREEPPPTVTVVALGNVDAGKSTLVGVLTTGRLDDGKGLARSYASRYKHEVLTGRTSAVSLRLLGFSGDKVVNHGLIDPLDEAEVYKRSDKLVLLVDVGGHERYLRTALGL------FSSQPDYVMLVVAANSGVQKMTKEAVAIGIPVFVVVTRIDITPSEVFQKTVEEVVRILKAAKAMPAGRVAPVFYVSSVTGHGLDLLLRFLS............................................................................. 325
33 -9.480[O] KOG0448 Mitofusin 1 GTPase, involved in mitochondrila biogenesis  ali follow..  11  58....................................QGYKDKLSIIGEVLSRRHMKVAFFGRTSSGKSSVINAML------WDKVLPSGIGHITNCFLSVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHMDKDLK---CALLRDDLVLVDSPGTDVTTDKFCLDADVFVLVA--NSESTLMNTEKHFFH---FILNNRWDASASEPEYMEDVRRQHMERCLHFLVEE-QNRIFFVSAKEVQEFQNFEQIFEECISQSAVKTKFEQIRAKQILATVKNIMDSVNLAAEDKRHYSVEEREDQIDRLDFIRNQMNLLTLDVKKKIKE.... 400
34 -9.450[R] KOG2750 Uncharacterized conserved protein similar to ATP/GTP-binding protein  ali follow..  18  311.................................ESWCSFSNQLLFSTSKSDYVVPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQP-PSGHIQG--ARMLFPTYMLRLHLGDISPQKDPDHYIACVTRLFAEYKDYIFN-LIINCPG-------------------IRGGGAELLSSIVDICQPTEVVYMSRED................................................................................................................................ 483
35 -9.260[H] KOG2743 Cobalamin synthesis protein  ali follow..  22  47..........................................................ITGYLGAGKTTLLNYILTE--QHSKRVAVILNE-------GEGSALEKSLAVSQGGELYEEWLELRNGCLDNGLRAIENLMQ--KKGKFDDILLETTGLADAELGSDIYLDGIITILTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSI............................................................................................................... 223
36 -9.200[J] KOG0466 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)  ali follow..  15  1.............MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISVRFKNELERNITIKLGYANAKIYQLDDPSCPRPECYRSCGSSMPDEFPTDIPGTKGNFRLVRHVSFVDCPGHD--LMATMLNG------AAVMDAALLLIAGNESEHLAAIEIKLKHI--LILQNKIDLVKERQAKEQYEQILAFVQGTVAEG----APIIPISAQLKYNIEVVCEYIVK............................................................................ 241
37 -9.200[D] KOG3022 Predicted ATPase, nucleotide-binding  ali follow..  16  59....................................................KHKILVLSGKGGVGKSTFSAQLSFALAGMDHQVGLMDIDPSIPLEGQEIHQSNLGWSPVYVEDNLGVMSIG-RGPR--KNGLIKQFLKDVYWGEIDYLVVDA-GTSDEHISIVQYLDGAIIVTTPQEVSLIDVRKEGVVENMSGLSQPFST................................................................................................................................ 243
38 -9.190[H] COG1072 Panthothenate kinase  ali follow..  14  49....................PLSRLLNFYISSNLRRQAVLEQFLGT--NGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVL-KERGLMKKKGFPESY-----DMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVI---PDGDKTVVQPDILILVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPED.............................................................................................................................. 226
39 -9.180[R] COG2229 Predicted GTPase  ali follow..  14  2....................................................RENKIIFTGPVGVGKTTAIAAIASDMTLDRKRNTTVAMD------GAISLDEDTKVH-------------------------------LYGTPGQERFNFMWEILSQGSMGLVLLLDNARTNPLKDLEFFLHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAK---------HNLNVPVFEIDARKEDDVKQLVSAMLF............................................................................ 170
40 -9.130[FH] KOG2702 Predicted panthothenate kinase/uridine kinase-related protein  ali follow..  17  122................................................FSPNLKRLVGLAGPPGAGKSTVANEVVRRVNKPPDVAIVLPMDYRSQLDA---MEDPKEAHARRGAPWTFLKKLKNEGSV-GVGDPVEDDIFVSLQH--KVVIVEGNYILLEE-DISDMFDEKWFIDVNLD----RHISTGKPPDVAKWRVDYNDRPNAELIIKSKT.................................................................................................................... 322
41 -9.110[C] COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain  ali follow..  15  7..........................................................ISGKGGTGKTTFSATIHALEGGVVADCDVDAPN-PEKCSSCGLCYDLCRFGAVVAEDGYYVDEKKCEG----VTEVKNRAKEIAEESNAEFLIVDSPGVGCPVMASLTGVDAAIIVTEPTV--GLSDMLRILFRIRPFVVVNKFDLN-ESYCSENGVEFAGRVPFDKAIPEQIANLNFPFSGKAADKMVEIWKKLRE............................................................................ 281
42 -9.090[P] KOG2825 Putative arsenite-translocating ATPase  ali follow..  12  10...........................................LENLLEQTSLKWIF-VGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNL--SDAFGTKFNLSAMEIDPNLSIQEMTEQFTIPGIDEAFAEILKQIKSMEFDCVIFDTAPTGH----------TLRFLNFPTV-GKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQKNPDLTTFVCVCISEFLSLYETERMIQELTSY........................................................................ 248
43 -9.060[R] KOG0395 Ras-related GTPase  ali follow..  17  18....................................................NSYRMVVLGASRVGKSSIVSRFLNGRFEDQY-------TPT--------IEDFHRKVYNIRGDMYQLDILDTSGN-----HPFPAMRRLSILTGDVFILVFSLDNRESFDEVKRLQKQIL-----EVKSCLKNKTKEAAELPMVICGNKNDHGELCRQ-------VPTTEAELLVSGDENCAYFEVSAKKNTNVDEMFYVLFSMAKLPHEMSPALHRKIS........................................................... 205
44 -9.050[C] COG3954 Phosphoribulokinase  ali follow..  19  2..................................................SAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDPEA-----SLLEHTFIGQTGKGQSRKYLHTYDEAVPWNQVPGTFTPWQPLPEPT--DVLFYE--GL-TPQHDVARHVDLLVGVVPIVNLEWIQKLIRDTSE........................................................................................................................................... 171

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.