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Query: [K] COG1725 Predicted transcriptional regulators, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTAIELLIKRSRNHELast
1 -63.000[K] COG1725 Predicted transcriptional regulators  ali  100  1MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTAIELLIKRSRNHE 122
2 -33.400[K] COG2188 Transcriptional regulators  ali follow..  27  1MIDLPDTASPLYEKVKDYILANIGTGRWGKDRKLPSENELVASLGVSRMTVHRALRELTAAGFLIRLQGVGTFIAPPRPQSTLIEINNIAAEIVE........................... 95
3 -28.600[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs  ali follow..  31  4ISLDRAANSPLIQQVYMQIRKKILSGELMAAEKLPSTRQLADLLGISRNVVLEAYDQLLAEGFLVSKRGAGTFVAE.............................................. 79
4 -27.900[K] COG2186 Transcriptional regulators  ali follow..  25  9......EPRRLYQQIADQIRELIDVGEFLPGTRLPAERELAQKLGVSRPSLREALIALEIDNTVEIRMGSGVYVSTEALQTTHHTKSLARAALEGATIVLAANRMTDETIAAL......... 124
5 -19.200[K] COG1802 Transcriptional regulators  ali follow..  14  9......KPETLRYQVENVLRQAIMSGRFTPGERLIE-RELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAI--SRQEAAELFALRGLLEGFAAREFAQRATDVAIVHF......... 113
6 -10.700[K] COG1654 Biotin operon repressor  ali follow..  16  5.............TVPLTLISLLADGEFHSGE------QLGERLGMSRAAINKHIQTLRDWGVVFTVPGKGYSLPEPIQLLDADR..................................... 71
7 -10.600[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  14  34...................................GIIKLSQETGIPEHKIRYSLRILEQENIISPSRE-GAILTPDFIEHKEQIIADAEKVLEEATKIAEDV................... 100
8 -10.200[KG] COG1349 Transcriptional regulators of sugar metabolism  ali follow..  22  21...................................SVEELAQYFDTTGTTIRKDLVILENAGTVIRTYG-GVVLNKHKTLINTHKKALIAAAAVKYIHDGDSIILDAGSTVLQMVPLLSRFS 114
9 -10.200[K] COG1959 Predicted transcriptional regulator  ali follow..  24  12....................RALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKGIRLGKPASAIR........................................ 75
10 -10.100[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  32  9..................LIKLAKMGAIGKEITV-TMRELSRELDVSPQTVLRWLEELKEQGYIHKRE...................................................... 57
11 -9.920[K] COG1321 Mn-dependent transcriptional regulator  ali follow..  16  1MVLMHTDRIEEYLETILYLITK--------NQGPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYKPYQGVELTEKGAEEAVRIKRK-HQVLETFLADV--LDFDRKEAHR.......... 101
12 -9.890[K] COG2378 Predicted transcriptional regulator  ali follow..  13  33...........................LRLARRPVTAQTIADMLEVTARSVYRDIAALQTMRVIEGERGVGYILRPG---------------------NLPPLMFSIEETEAIV........ 100
13 -9.810[K] COG3355 Predicted transcriptional regulator  ali follow..  24  43...................................TTDDLSQKLNVTKASISKALNNLLDKGLIQREK...................................................... 75
14 -9.700[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  11  1............MELSPVFARRLYLALLVESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDGRR................................................. 61
15 -9.680[K] COG1846 Transcriptional regulators  ali follow..  15  58...................................LMKELAERLGVTKGAVSQLVDRLEAKALVRRSRGIQVVLTDKGREAYRAHADMHAAFYEELQQ-----SFTKEEIAIFEQ....... 138
16 -9.580[K] COG1497 Predicted transcriptional regulator  ali follow..  14  1........MKALRKKGELTRFQILS-EIAMRQPYVRQKDIADKLGVTVQAVSENIKSLIAEGLVESGSGRSHYKITRRGA.......................................... 71
17 -9.450[K] COG2345 Predicted transcriptional regulator  ali follow..  1..MGDVVKGNDAHTGDGDTRRKILLILLERAPV--IASDIAEQLQLSTVGVRRHLDNLVEENLAEAA....................................................... 63
18 -9.340[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  16  38...................................RIREIQRELGISERSVRTHVLNLYRRGLLKRELVQSIYTPVSPLEILQKIKEHLMKSIEELERDLKNQTRS................ 113
19 -9.120[S] COG4861 Uncharacterized protein conserved in bacteria  ali follow..  137.....DGPRNPFTPKRAQVVCVLLD---APQLVDAPLRAIAASAGVSVGMAKETMDTLRTTGFF-EHLGSRRRLVRTDELLDL....................................... 210
20 -9.090[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  12..............INDYDMLRVLKHFTIAHVD--YAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTN..................................................... 64
21 -9.070[K] COG1777 Predicted transcriptional regulators  ali follow..  12  8..........FIAAIENSTRREIIR-MLTQFERS-YALELSRSIGLSQQAILKQLEMLERANLVTSIG...................................................... 63
22 -9.030[K] COG0640 Predicted transcriptional regulators  ali follow..  14  1....................................MNEITMQTQADQPKVSSNLAILSEARLVDSIQGREKIYRIAPEKFEDMVDWLDS................................ 55

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.