current user: public

If you have questions about the server, please let us know.

Query: [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .
# Score Template Links and tools%idFirst MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMILQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQKGWVKLast
1 -114.000[M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  ali  100  1MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMILQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQKGWVK 305
2 -50.000[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components  ali follow..  13  1MLKQITAMTAGLLMTAAAAEPESCKTVRFSDVGWTDITSTTAVASTILEALGYAPQSKL--LSIPVTYASMKNKDIDVYLGDWQPSMEADRKP------------------FLEDKSIEVIGPNLTGAKYTFAVPKYVADA-GVKDISDLQKFPDKFGRKIYGIEPGN-NGNRMILDMINKGDFGLTGWE-LVESSEQGMLAEVERATKDDQWIVFLGWAPHPMNTRYQIDYLSGADAYFGPNYGGANIRAGYAQECPNVARFVTNL--RFTLEMENEIMNGILNDGNDPKDAAADWLKAH.... 283
3 -14.000[P] COG4521 ABC-type taurine transport system, periplasmic component  ali follow..  14  1..MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDSGASIV-RALASGDVQI---NLGSSPLAVAASQQVPIE-------------------VFLLASKLGNSEALVVKK------TISKPEDLI---GKRIAVPFISTTHYS-----LLAALKHWGIKPGQVEIVNLQPPAI-----IAAWQRGDIDGAYVWAVNALEKDGKVLTDSEQVGQWGAPTLVWVVRKDFAEKHPEVVKAF--SKSAIDAQQPYIANPDVWLKQPENISKLAR......... 254
4 -12.900[R] COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain  ali follow..  11  1MKK----IITLFGACALAFSMANADVNLYGPGGPHTA--LKDIANKYSEKTGVKVN--VNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPL--------------------YFREAIILTQKG--NPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVIAKEGASKETQDFIAYLS-------------------------SKEAKEIFKKYGWRE 250
5 -12.100[R] COG2358 TRAP-type uncharacterized transport system, periplasmic component  ali follow..  3LSRRFGLFTLAATVTFSTSVFAAPTFINILTGGYPIGVGLSQIYGHDIQGAKTSVQAT---KASVENLNLLQAGRGELALALGDSVADAWNGVADAGFKAPLKKLRAIGNTYPNYIQVV------------------ASQASGIKTLADLK-------GKRISVGAPKSGTELNARAIFKAAGLSYEDMGKVE-----LPYAESVELIKNRQLDATLQSSGLGMAAIRDLASTMP-AKIDSPAYHAASIPAGTYDGQEQDVPTVA-SHSGVSDELAYQMTKLMFDNLPRLVTAAERFYKEKGVLP 318
6 -11.500[P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen  ali follow..  12  7MKFTIAAAASTLILAGCGEKAVDNNKVKIGVMAGAEAQVAEVAAKVAKEKYNLDVELV-TFTDYVTPNAALDDGSIDANAFQHKPYLDKQIADRGYKLAIVGNTFVYPIAGYSKQIK----SVDELQDGARIAVPNDPTNLRSLLLLQQQGLLKLREDVGLLATVRDIVENPKKLE--------------------LELDAAQLPRSLDDVALSIINTYASSINLTPEKDGIFVENKE--SPYVNILVAREANVNA-----ENVQNFKKAYQTDEVAKA.......................... 262
7 -11.400[H] COG2998 ABC-type tungstate transport system, permease component  ali follow..  10  5MKKTTFTLAASLILVSYSASSADDARIRLATTSTYDSGLLDYLLPKFEQDTGYKVD--VIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRK------------------------MYNDFVVVGPES--DPAKIADEKNIAKVFENISGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQ---GMGPTLNMASEMQAYTLTDRGTWLAYNN---ILFEGDEQLFNPYQVIIVNPERYPTTQYHAAKVFSDW---LVNPKGQQLINEFKVNGQQ................ 266
8 -10.800[P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components  ali follow..  13FIFTAGASASAVFLKGCLEQAPEVTTVKLGYIPIVESALIIAKEKGFFAKYGLTNVELSKQASWGSARDNVEIGSAGG--GIDGGQWQM-----------PHLITEGLITKGNQKIPMYVLCQLITHGNGIAIANKHQGSGIGLRLKSLFSKLKASPTPFTAAQTFPAVNQDFWIRYWLAAGGIDPDA----DVKLLTVPSAQTVANMKTGTMDTGDPWPFRIVKDKVGFMAALTAEIWKNHPEEYLAMRSDWVDQHPKATKALLKCDNFDNRKELAEIVAARAYFNVPVDVLID.......... 331
9 -10.700[P] COG4150 ABC-type sulfate transport system, periplasmic component  ali follow..  11  1MKQNGLTHIALFSALILSGVTASATELLNSSYDVSRELFLNPGFQAQWEQQGDKLTIKQSHAGSSKQALAILQGKADVVTYNQITDVQILHDRGNLIPADWQARLPN--------------NSSPFYSTMAFLVRKG--NPKNIRNWDDLVR-----EDVKLVFPNP-KTSGNGRYTYLAAWGATQLADGGDEAKTRDWMKRFLKNVVERGLGDVLISFESEVNNIRKEYEVIVPPVDILAEFPVAWVDKNVEKNGTEKAAKALNYLYSPPAQQVITRFNYRVYDKAAMEPQVMSTHFTTGGVLD 337
10 -10.300[K] COG3888 Predicted transcriptional regulator  ali follow..  48IKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRF-YDDAISLMNDLSQGLLEFALAPIFTEII-----------------------------------YSISNRNSIILGAVASGGSGVYKNVNCNCGK---------LTSESSSMMILAREFAKTRKISEIAIF--------KDPRRAIKDYESFKAEYIVIW--EPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLVSPKTAKASLENYIWDIKFYRSDLKKYLEGYPPIEEIIE 321
11 -9.540[P] COG1613 ABC-type sulfate transport system, periplasmic component  ali follow..  12  1MSSNSLAGIVKLALVVGIGLALADTTILNVSYDPTRKEFNAAFAEKWQADTGETVTIQTSHGGSGKQARSVIDGEADVVTLALEADIDAIAKESGKIPADWKSRFENNS--------------APYTSTIVFLVRKGNPKA--IKDWGDLVR-SGGARWNFLAAWAWARAANNGDDAKAQEY---VAQLFKHVPVLDTGARGATTTFVQRGLGDVLLAWENEAYLSLEEFDIVTPSISIKAEPPVALVDGNVDSKGTRKVAEAYDVGQKIAAKHYYRPFKPELADPKDTAKEAQPKFFGDGGVFD 334

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.