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Query: [R] COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKYLDEIREKVKEYLPPKVRVKSIEFEGPQLVIYVENPQELAEVDIVKKLAKDLRKRIIIRADPKSLKPPEKARQIIMQIVPEDARISNIFFDEENGEVIIEAEKPGVVIGKQGSTFREIMRAVGWSPRVVRTPPIKSKIIDNIRNYLLSVREERSEILKRIGERIHRTSLIDEKWVRVTFLGGSREVGRSCYLLQTPESRILIDCGVNVSNLSSTPYLYVPEVQPLDALDAVVITHAHLDHCGLVPLLYKFGYRGPIYLTPPTRDLMVLLQLDFLEVAGREGTNPPYSSNLIREALKHTITLDYGVVTDISPDVRLTFYNAGHILGSAIAHFHIGEGHYNIAFTGDFKFEKTRLFDRAATNFPRLEALVMEATYGGPNDFQPSRKEAEERLIEVINRTLDRGGKVLIPTFAVGRSQEVMIVLEEAMREKRLRETYVYLDGMIYEATAIHTAYPEYLNAQLRDLIFYHGINPFISENFVRVDSSSKREEVISDPSPSIIIATSGMLNGGPVMEYFRHLAEDERNTIVFVGYQAEGTLGRKIQKGWKEVPFPVDGRREVVEVKMEVETVDGFSGHSDRKQLMNYIRYLNSKPEKVATVHGDESKCIDLASSIYKTYRIETRAPMNLETIRFVLast
1 -171.000[R] COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain  ali  100  1MTKYLDEIREKVKEYLPPKVRVKSIEFEGPQLVIYVENPQELAEVDIVKKLAKDLRKRIIIRADPKSLKPPEKARQIIMQIVPEDARISNIFFDEENGEVIIEAEKPGVVIGKQGSTFREIMRAVGWSPRVVRTPPIKSKIIDNIRNYLLSVREERSEILKRIGERIHRTSLIDEKWVRVTFLGGSREVGRSCYLLQTPESRILIDCGVNVSNLSSTPYLYVPEVQPLDALDAVVITHAHLDHCGLVPLLYKFGYRGPIYLTPPTRDLMVLLQLDFLEVAGREGTNPPYSSNLIREALKHTITLDYGVVTDISPDVRLTFYNAGHILGSAIAHFHIGEGHYNIAFTGDFKFEKTRLFDRAATNFPRLEALVMEATYGGPNDFQPSRKEAEERLIEVINRTLDRGGKVLIPTFAVGRSQEVMIVLEEAMREKRLRETYVYLDGMIYEATAIHTAYPEYLNAQLRDLIFYHGINPFISENFVRVDSSSKREEVISDPSPSIIIATSGMLNGGPVMEYFRHLAEDERNTIVFVGYQAEGTLGRKIQKGWKEVPFPVDGRREVVEVKMEVETVDGFSGHSDRKQLMNYIRYLNSKPEKVATVHGDESKCIDLASSIYKTYRIETRAPMNLETIRFV 632
2 -92.200[A] KOG1136 Predicted cleavage and polyadenylation specificity factor (CPSF subunit)  ali follow..  29  2...............................................................................................................................................................................PDIKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFPEGPITSHIDCVIISHFHLDHCGALPYMSEIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGENFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKV--GSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYAT--TIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNM-------FDFKHIKPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVGNKILGGAKKVEF----ENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCE--PKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGETCVI. 446
3 -90.600[A] KOG1137 mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit)  ali follow..  25  2.............................................................................................................................................................ASSSTSLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF-DEIDPSSIDVLLITHFHIDHAASLPYFLKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDI--AGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGV--QLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANPDLHNIPIYYASLAKKCMAVYQTYILSMNDRIRNQF--ANSNPFVFKHISPLNSIDDFND----VGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLM----NGLTAPLNMQVHYISFSAHADYAQTSTFLKELM--PPNIILVHGEANEMMRLKQKLLTEFNTKIMTPKNCESVEM. 463
4 -72.600[A] KOG1138 Predicted cleavage and polyadenylation specificity factor (CPSF subunit)  ali follow..  13  19.................................................................................................................................................................................FVQSLKWSNLPNFVPSRDHDPQMDGELKDCCGRVFVDSTPEFNLPMDMLDFSEVDVILISN-YLNMLALPYITENTGFKGKVYATEPTLQIGRFFLEELVDYIEVSPKRTIFSLKDVQGSLSKVTIMGYDEKLDILGAFIATPVSSGYCLGSSNWVLST--AHEKICYVSGSSTLTTHPRPINQSALKHADVLIMTGLTQAPTV---NPDTKLGELCMNVALTIRNNGSALIPCYPSGVVYDLFECLTQNLENAGLNNVPMFFISVADSSLAYSNILAEWLSSAKQNKVYL-PDDPFPHAKLKHYNHVFSEGFSKDFRQPCVVFCGHPSLRFGDAVHFIEMWGNNPNNSIIFTEPDFPYL----------------QVLAPFQPLAMKAFYC-PIDTSLNYQQANKLIKEL--KPNVLVIPEAYTKPHPSAPNLFIEQPDKKIITFKCGEIIRL. 481
5 -62.300[A] KOG1135 mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit)  ali follow..  21  2..............................................................................................................................................................................TSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPF---IPKISAVLISHPDPLHLGGLPYLVSKGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLDDVDTAFEKVEQVKYNQTVVLKGGVHFTALPAGHMLGGSIWRIC-RVTGEDIVYCVDFNHKKERHLNGCSFDFNRPHLLITGAHHISL--PQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLDQLWSNADLSTYNLVMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARNPFTLKHVTLCHSHQE---LMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTARPASFTLAAKLVNMAERANTKCVEFKNRVEVSCRIEFIE-YEGISDGESTKKLLAGL--LPRQIIVVHGSRDDTRDLVAYFADSDTTMLKAPEAGALVDAS 634
6 -54.200[J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing  ali follow..  18  3...............................................................................................................................................................................................SVISSEIGVSKKLIDLGVLALRQRNSRGNFKPHVSKQPQPDAYLITHAHSDHHGKSAML-----SPRAVCTDKTATALEIRHDRKYVGS----------------------MCRLGDEIEI-EGVRVKTYPTAHTAGAAAFYWENDVG-TRILVTGDVKNASKLP---------PCDVLITEANYGDPEDPSCH----FADDLESMKCALFESGPVAFGAYEFGKAQRAVELMRGFGYE-----GAIRMEARTRALTRSMLEDAGELAG------------------------------IDSRGEDEVFVVAPWDLDKLPRN---------------VKKYVLSCRADYPYPI--------------------------KISDHLDACGLEDMVRKLT--PEVTLVYHPGGHRPSKFSKHLNSIGIDSISIDQIGNVLSN. 346
7 -27.600[L] KOG1361 Predicted hydrolase involved in interstrand cross-link repair  ali follow..  16  151.....................................................................................................................................................................................................LPGTPFTVDA-------------------CVQGCSAYFLTHFHADHYI----LTKAWSHGPIYCSSLTSRLLRLSLS------------------------SSIHPLELDVEYTI-NGIKVTLIEANHCPGAALIHFR-LLDGTCYLHTGDF-RASKQMQTHPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKIVVGSYSIGKECVYLAIAKAL-------GVKIFANASRRRILQSFGW--DDISKNLSTDGKATCLHVLPMSSLKVERLDEHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVP--------------------------------------YSEHSSFTELREFVQFLR--PDKIIPTVNNAGTREKMQSCFRE.................. 480
8 -24.800[R] COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily)  ali follow..  12  42.............................................................................................................................................................................KAINMKVIPLASESLGVSLALFLKIGKVGILIDPGVALGPKRYALPPAEKIQEYAKKAQIVTISHYHYDHHTPFFEGI---ESSSVEKAREIYAGKLLLIKHPTENINNSQKKRAHEFLKNAKEIAKDIKFADSQSFDFGSFTIEFSPPVPHKLGYV-LMVLVDDGKKSVLHASDTQLINDKAVE---IIEKNPDILIAGGPPTYLAHRVGNVKEIG---MKNINRIISETNAKIVLDHHIIRDKGYERFFSELDERPLTFAEFLGKESAPLEARELHKLEK................................................................................................................................................................................. 334
9 -23.900[R] COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily  ali follow..  17  2...............................................................................................................................................................................SNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFV-LLENADRVAGIFLTHGHADSIGALPYIVSE-LKVPVFGSELTIELAKINVKNY----------------ADSRKFNDFHVVTEDTEIDFGK-AVISFFSTTHIPESLGIVISTNDG--NIVYTGDFRFDPAVAKGYAEIGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDYIDDN---EGRVIIACNALGRIQQTIDAAIKLGRR-------VAFTGEDMDQIIETATRLNKLQIVDKKSII-------------------KPAEIKKYADNELVILETG--RMGEPLKSLGDMAHKDGDLVLAVTSPSVSY--ARIENEIYKAGGVMKMLASDLKI----------SGHANARDLQFLLDIF--RPKNLIPIQGEYRELSAHADLAMEM-PEHIFIAKRGETVSL. 421
10 -20.800[T] COG5212 Low-affinity cAMP phosphodiesterase  ali follow..  13  20............................................................................................................................................................................LVENSFTLYSLGQNGGPLESSHLISDGAFQISLDGGSHLSALVELIQSKKAWHLSEQRIKTFLITHCHLDHIYGAVINSAMFGPQTIVGLNYVIDT----------LKKHVFNNLLWPS--DKAGFINFQVVEPSMYTSLTTTLSILPFPVNH-LKSSAFLFRNNLSDRYFLAFGDVEPDMVASEPSSLIAQRKLSHILIECSTPDIPDTLLFGHFCPRHLVNELCILQSLVQTCLLSHPLQSAADVILEQLESLSSKSSLSTFKILQRGQFYKF......................................................................................................................................................................................... 346
11 -19.900[R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I  ali follow..  13  17............................................................................................................................................................................ESNRNFRVKIWGARGTLNTICIEVRCGDHVLLFDAG--SGLHPAGL----ALRAEGITDVNLFFSHCHYDHIVGFPYFKPFYNSSNDVAIWSGHLAGSMTTREMLKDFMSPPWFPV--PLEICCAKIATRDFKAGDVLDVHPGLSIRTGMLNHPGNA--IGYRLDWEGKSLAIITDTEHEPSSIDETVLDLIRDVDLFLYDAMF--TDEEMGLYRGYGHSSWQQAIRLAKLADNVGFIHHAPSRSDEELDDIEKQAKA-EFNGAFAAMDGQVIEI......................................................................................................................................................................................... 292
12 -15.300[R] COG0491 Zn-dependent hydrolases, including glyoxylases  ali follow..  14  1.................................................................................................................................................................................MEILGF-AAGPYKTNCYVVRGENEVAIIDPGMHAHDDLVEYITTNNL-----SVDKIVLTHGHIDHTRDAGVVAKR-FNAPVYIHPDDAFFL-----EVYKGSGTKTAMLFDADNMVSPDPESLRDLVDGETITLAGEEFTLKHAPGHSPGCTLIVGK------EYCFSGD---------------------VLFKGSIGRTDFEWSDADAMNESLRTAVLPL--DDALQILPGHTMRAERTGNPFLLAL............................................................................................................................................................................................................. 213
13 -14.800[R] KOG0813 Glyoxylase  ali follow..  15  7...............................................................................................................................................................VTRLTSSVIRILGCNPSAMTLQ--------GTNTYLLGSGSRRILIDTGD-EDVPQYIAHLGDVLQQEKASIDTILLTHWHHDHVGGVKSIVGT-KLAEKDCRVFKFGRTD-------------------DVCPEIPTDIKLHPLAHNQEFTTEGANVRVVHTPGHTTDHVVLAMN-----EGTLFSGDILGEGTAVFEDLFEYMKSLEKIVIEEPIGKIEYYINHRNQREQQILQFFVQRPNENLQATPENLWPAAAYNVNHHLSKLEKEGKL....................................................................................................................................................................................................... 273
14 -14.100[R] COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III  ali follow..  13  1.................................................................................................................................................................................MDIQFLGTGAGQNVSSLALKLINEVWLFDCG------EGTQNRILETTIRPRKVSKIFITHLHGDHIFGLPGFLSSGPQGIKSFVLTSLRVSGSRLPYRIHFHEFDQDSLGKILETDKFTVYAEAGVPFGPLFGKIKNGQDLVLEDGTEIKAADY-ISAPRPGKIITILGDTRKTGASV-------AVNADVLVHESTYGKGDEKIARNHGHSTNMQAAQVAVEAGAKRLLLNHIS-ARFLSKDISKLKKDAATIFENVHVVKDLEEVEI......................................................................................................................................................................................... 309
15 -13.900[R] KOG2121 Predicted metal-dependent hydrolase (beta-lactamase superfamily)  ali follow..  14  481.............................................................................................................................................................................RRDDMEIVILGTGSSQPSSAIFIDLFSRGLLLDCGEGTLGQLKRRYGLDGADEAVRKLRCIWISHIHADHTGLARILALR--HEPVIVVGPRPRLEDLDMEFLDCRSTTATSWASLESGGEAEGSLFTQGSPMQSVFKRSDISDLISFPVVHCPQAYGVVIKAAELGWKMVYSGD-SRPCPETVEASR----DATILIHEATFEDALI-----EEALAKNHSTTKEAIDVGSAIVLTHFS-QRYPKI-----PVIDESHMHNTCIAFDLMSINMADLFRDEMVEDEDADDVAMDDLKEEAL.............................................................................................................................................................. 837
16 -13.500[S] KOG4736 Uncharacterized conserved protein  ali follow..  13  58.....KTTEATTTETTPEAPTTSEPRSHSRDVCPFFAEPGYLCDQSVKRSICKDTRRGIVPNGRPSTVTPTAAPSQPIPTATSRKA-IKDRTAWPTYNRISAEKALQKTSTTQETTTSTTAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTTEPTTTTPKVNSWAKLWTSTAEPKSYVNVTVLDGQVEAVGAITLVNDNGYIVLIDTGASSDTERLLHS--AKESVTLDQIDSVVITHASPGHMGNMNFFAQKPI--------------------------------LYHSMEYIGRHVTPTELKERPYRKLSGNVEV-WKTPGHTQHDLSVLVHNVAGYGTMAIVGDL--------------------IPSEHLLSEKRDVMIEEGVWDNAIKRQNANLIVCMADWIVPGH............................................................................................................................................................................................................................ 463
17 -13.200[R] COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II  ali follow..  13  27..............................................................................................................................................................................................GFSALVESNGYKVLVDTG---TDGKVLLNNMHELGIDANDIDVLFITHGHYDHTGGLKEFLKERSEPIEVYAHPKPRKRDIGIPFQRKELEELGARFNLSPEPLEFLPGFISSGEIKRVTWDRAVGYFPDGRKDPVRDDMALIVEGSKG---VVISGCGHSGIINIARHAMELRGSKIAALIGGFH---------RGAKKELLDDVVTNMKELGVNALYPGHCTGIEEFSYL.................................................................................................................................................................................................................. 254
18 -13.000[C] COG0426 Uncharacterized flavoproteins  ali follow..  11  53............................................................................................................................................................................................TTYNSYLIR-GEQTVLVDTSHQKFRQLY--LETLKGLINPKAIDYIIVSHTEPDHSGLVEDVLQLAPRATVLASKIALQFLEGLVHDP----------------------FSKRIVKSGDRIDIGKGHEIEFVSA-HWPDTIFSY----DRKTEVIYTCDA----GMHFCDNRTFDEDLEAIEADFRFYYDCLMGPNARSLLNAMKRMGD-------KIIANGHGPLLYHHLDVLTECYQS---------WSQRQAKSETTVGLFYVADYGNLLVQAIGEGIQKTGVAVEMIDLSTAEIQEIQELAGRAAGLIIGMPPTTSVAGISSLLSVVKDKQAVGLFECFGGDDEPVDTIRRKFIDLGVKEAFPAIRIKDVPGASAYQLCTEAGTD...................................................... 405
19 -11.700[R] KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily)  ali follow..  11  71....................................................................................................................................................................HNITADDFHSESGLFATWLG------HATVLVDLEGVKFVTDASFTSFAGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDAVKRITNLNPQIKWFVPLGLKKWMK------------------------ADGSNTVTELNWGESSEFGKTITIWCLPAQHSGQRGLSDHNVIGENRRFYFPGDTGF-CDVEFKKIGEKLGPFDLAAIPGAYEPRWFMKSHHINPD----EAVEVHKLVRARNSIGTYPMGTTEYYLEPRDKLKELMD........................................................................................................................................................................................................ 332
20 -11.400[R] COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily)  ali follow..  15  79.............................................................................................................................................................................SKPTWQVDTLDVGQ---GLATLIVKNGKGILYDTGSSWRGGSMAELEILPYLQREGVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKN-------------YGENYRTFCTAGRDWHWQGLHFQILSPHNVVTRADN-------------SHSCVILVDDGKNSVLLTGDAEAKNEQIFARTLG---KIDVLQVGH--------HGSKTSTSEYLLSQVRPDVA--------IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVR........................................................................................................................................................................................ 306
21 -10.800[R] KOG0814 Glyoxylase  ali follow..  14  49..........................................................................................................................................................................................GESSTYSYLLLKNGQAVIIDPVLEQAKRDAQLVKDLGF-----ELKYAINTHMHADHITGSGWL-RKLTGCQSVIAAASGAKADRHLNE-------------------------------GDRIDFGTHVIDALATPGHTNGCMTYVI----KDQGCVFTGDTEGCPRNLYENVHSKIFTLNFRIYESSVWEEKRYNPRLTKDIEEFVKIMENLNLPYPKKI................................................................................................................................................................................................................................ 254
22 -10.500[R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold  ali follow..  15  99.............................................................................................................................................................................NSENDSLTWFG------HSAFLLNVDNKQLLID--VGRNRYEYSEDIMLHLIDEMPPIDAVLITHDHYDHLDYRSIVKLNNKVSHFFVPLGCSAHLIRWGIPEEKITE----------------------LNWWEETEY-QGLTVALTPSRHSSGRNPFNIDILGNKTRVYTSGDSGYGPH--FKQIGDKYGPFDITLIEAQYDRNPDLHMVPEQAIQANLDV-------GGKTMMLAFTLA-NHAWNEPIERALKEAKIREVNIIAPMIGETVL........................................................................................................................................................................................ 358
23 -10.500[Q] COG2015 Alkyl sulfatase and related hydrolases  ali follow..  11  24.................................................................SLIADTKAPSPTTKAF--AAEQRNTLPFADQED---FKLVEKGLIAQQKDLEIKDANGKVVWELGNYRFLLDGLDYDSIHPSLQRQAQLNMHHGLYKVTDRIYQVRGYD----------------ANITFVKGDTGWIVFDPLTVP-ATAKAALDFVNQELGERPVKAVVYSHAHADHFGGVKGIVSQGVTMEFQNTPGSPAEMNTYFPQFKALWMAENTVGGLHNVYTLRGAEVRDAKAWSKYIN---AKEADVMFASHRWGNDNINHFLRKQRDMYGYIHD-GVTINEIQDEFHVPDVLAHEWYNRGYHG-------SYHRNAKAVINKYLGYFDMNPATLRPL-AMGGMDNVIKLGKEAFDKGEFRWCAEIVDKAVFSNKQARYLQADCLEQLGYQSESAGERNTYLMGAYELRNGVPKVSATKTAGADTVVAMDTELFLDYLGVRLNGDKAAGIDYTINFVLPDVNEKFLVELENAHLNNLKGIQSENPDMTLTLNRAQLNQV--------LMGKTTIQQLAKEGKAKIEGNAQALTDIAGMLDNEFWFNIIEPK........ 658

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.