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Query: [K] COG1802 Transcriptional regulators, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNATLast
1 -87.000[K] COG1802 Transcriptional regulators  ali  100  1MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNAT 220
2 -61.400[K] COG2186 Transcriptional regulators  ali follow..  28  1MNGQAKIAEPRRLYQQIADQIRELIDVGEFLPGTRLAERELAQKLGVSRPSLREALIALEIDNTVEIRMGSGVYVSTEALQSPSELMQARAALEGATIVLAANRMTDETIAALRQILNTMQKEIEAGR--KPLDQDRLFHVTIAEQSGNSVLARLVANLHSPISAQLRVKFEDRDTWTRALQEHEAILAALELKDPLLAQAAMHIHLEGSKRRWVDS... 230
3 -23.400[K] COG2188 Transcriptional regulators  ali follow..  22  7........TASPLYEKVKDYILANIGTGRWGKDRKLSENELVASLGVSRMTVHRALRELTAAGFLIRLQGVGTFIAPPRPQSLIEINNIAAEIVERGNRHRSEVLVLETIMPTKELALSFE................................................................................................... 121
4 -19.200[K] COG1725 Predicted transcriptional regulators  ali follow..  14  7........ADKPIYSQISDWMKKQMITGEWKGEDKLPSREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS-ALFDQLKKELADAITERFLEEAKSIGLDDQTAIEL........................................................................................................... 113
5 -16.100[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs  ali follow..  29  2LWISLDRAANSPLIQQVYMQIRKKILSGELMAAEKLSTRQLADLLGISRNVVLEAYDQLLAEGFLVSKRGAGTFVAE............................................................................................................................................... 79
6 -11.500[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  13  1............MKMKTLFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKGTLVELTEKGINLLEKLYEEISTALYSGFIVGEVISGIGEGAYYVRQYAPLIRE.............................................................................................. 114
7 -11.500[K] COG1321 Mn-dependent transcriptional regulator  ali follow..  18  3..........LMHTDRIEEYLE-TILYLITKNQGPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYKPYQGVELTEKGAEEAVRIKRKHQVLETFLADVLDFDRKEREACELEHAVSD..................................................................................................... 112
8 -11.400[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  17  8..........REIINDMDTLKRHISVINVLLREQPIGIIKLSQETGIPEHKIRYSLRILEQENIISPS-REGAILTPDFIEHKEQI...................................................................................................................................... 82
9 -10.900[K] COG1846 Transcriptional regulators  ali follow..  24  51.............................IGTDEGLLMKELAERLGVTKGAVSQLVDRLEAKALVRRTAVSRGIQVVLT-DKGREAYRAHADMHAAFYEELQQSFTKEEIAIFEQCVSKLRDILSE.............................................................................................. 149
10 -10.900[K] COG2345 Predicted transcriptional regulator  ali follow..  11  1MGDVVKGNDAHTGDGDT----RRKILL--LLERAPVIASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPRQAKTYRLTDKGRSIFGHEYDSLAAAALATLREVGGDDAVRQFARKRIETIVEGITPADVTDQSIEDTAKSLVEAFSRHGYAATVDAT---QLCQHHCPISTVATEFPELCEAEHQAVSELLGQHTQPLATIAD................ 211
11 -10.500[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  14  250.....................LCEVLDIIRGHKGRITQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEE.......................................................................................................................................... 310
12 -10.400[K] COG1510 Predicted transcriptional regulators  ali follow..  15  29.................MPSTVGRVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVREMIDANIAEKVFEKG---------VRKDLYDVEQDYYQTFISLFAANWT-KVVSKNKVLYKKLNRELSD.............................................................................................. 127
13 -10.300[K] COG1654 Biotin operon repressor  ali follow..  27  9...................TLISLLADGEFHSGE-----QLGERLGMSRAAINKHIQTLRDWGVVFTVPGKGYSLP--EPIQLLDADRIHSQLDS............................................................................................................................. 78
14 -9.990[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  14  88........................ILHSIRHRDREKKLADICLALDIETHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQIRERLLVDSTANRPSEETLSELAALLRFMSGAFNQ.............................................................................................. 191
15 -9.950[K] COG1378 Predicted transcriptional regulators  ali follow..  17  28..........EVLKRLGFRDYEARVYATLATRGE-ATASEIHRVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAIDPESVLEEYQLVSAVDTAIRSIRESEDFSTLVRGLAGIKNRAKAMLQRSEEVFVITAKRVYLDMILK........................................................................... 168
16 -9.400[K] COG1522 Transcriptional regulators  ali follow..  13  1............MSKVELDKIDRKILE-VLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIR-------YAALLDPGKI---LGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVT............................................................................................... 104
17 -9.360[K] COG1959 Predicted transcriptional regulator  ali follow..  17  3............LTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHIT-QALSKAVQSFLTELDNYTLADLVEENQPLYKLL............................................................................. 138
18 -9.230[S] COG3398 Uncharacterized protein conserved in archaea  ali follow..  10  95ILGFRITERADVFENSNRARIYEYIKT---RPGAYLSE--IIEKAGIDRGAARYHIKILKAHHKIEAYRESGKVVSALQNATNQRIISEIQNGKCNTNLALAREIGVSR--YVKNLKETGLIDETRSGRSIIYSINPSYEPLIEKYG......................................................................... 255
19 -9.210[K] COG1777 Predicted transcriptional regulators  ali follow..  30  1MIDDID-----NFIAAIENSTRREIIR-MLTQFERSYALELSRSIGLSQQAILKQLEMLERANLVT.......................................................................................................................................................... 60
20 -9.030[K] COG3355 Predicted transcriptional regulator  ali follow..  19  36.............................LLQNGKMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKAKEERKGRPNYIYWVEKERLYRKLEADLEKLA-GTVKEALQKHTALEI....................................................................................................... 125
21 -9.000[K] COG1497 Predicted transcriptional regulator  ali follow..  19  2...........KALRKKGELTRFQILSEIAMRQPYVRQKDIADKLGVTVQAVSENIKSLIAEGLVESGSGRSHY--KITRRGAEKIKEAAMDLRRY............................................................................................................................ 84

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.