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Query: [S] COG1814 Uncharacterized membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst METTSNSKLVEVARKAALDEYKEYVTYSVLARVERNKARRAVLERLAEQEREHFQFWNKFAGVKPPAWRFRLYAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAEPLLSGPDREALRRIIKDEEEHERALIAQLDEAIVKYMGALVLGLADAIIEITGAHAGTLGTTNNTVAAGVIGLIVGVGAAISMASASYLQTKHEVGKSPSVAALVTGVGYIAAVALMSLPYFLIHDVYLAFAASIAVGVMLTFLLTFQSAVYADRDFKFEFLQTVGLLLGTAFLTYLLGEWLGSLFGIRNILLast
1 -98.900[S] COG1814 Uncharacterized membrane protein  ali  100  1METTSNSKLVEVARKAALDEYKEYVTYSVLARVERNKARRAVLERLAEQEREHFQFWNKFAGVKPPAWRFRLYAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAEPLLSGPDREALRRIIKDEEEHERALIAQLDEAIVKYMGALVLGLADAIIEITGAHAGTLGTTNNTVAAGVIGLIVGVGAAISMASASYLQTKHEVGKSPSVAALVTGVGYIAAVALMSLPYFLIHDVYLAFAASIAVGVMLTFLLTFQSAVYADRDFKFEFLQTVGLLLGTAFLTYLLGEWLGSLFGIRNIL 299
2 -52.900[S] KOG4473 Uncharacterized membrane protein  ali follow..  13  4......................................................................................................................NNNNLNLDMEKDQETTFDYSKRAQWLRAAVLGANDGLVSTASLMMGIGAVKQDVRIMLLTGFAGLVAGACSMAIGEFISVYSQYDPSPTQAAIASALAFTLGAIVPLLAAAFVKEYKVRIGVIVAAVTLALVMFGWLGAVLGKAPVVKSLVRVLIGGWLAMAITFGFTKLVGSH-GL.... 198
3 -26.000[S] COG1633 Uncharacterized conserved protein  ali follow..  15  12..VRNLKGIEEAIALAIDREKEAREFYLQQAGLMENPKFKELYEELAAEEMKHLGYLENYRDKKELPEISTFDASRTKVGEITLGDAGILLAAMRHERKSEDFYSEMAKRVEDEKKFFEMLSRYERGHYEVIDSYLEY................................................................................................................................................................. 160
4 -20.800[S] COG3461 Uncharacterized conserved protein  ali follow..  19  11.ELTGKDRDFVRALNSLKEEIEAVAWYHQRVVTTKDETVRKILEHNRDEEMEHAAMLLEWLRRNMPGWDEALR.................................................................................................................................................................................................................................. 82
5 -16.600[S] COG4902 Uncharacterized protein conserved in archaea  ali follow..  11  43.YAPLSDEEANSLLYMIEEEKLARDVYLKLYNETG----LIIFDRIAQSEQRHMDAVLMLIEKYNLTAPDT-NLYNELVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEKVVFENLMDGSKNHLRAFTKVLAD................................................................................................................................................................. 189
6 -14.900[R] COG2406 Protein distantly related to bacterial ferritins  ali follow..  20  15....DVDKLLELLIKNAAAELTTYYYYTILRANLIGETIKEIAEVARIEDRNHFEALVPRIYELGGKLPHDLSACPPARLPDKPTVQEILRVLVAAERCAVKGYTEICNMTAGTYELSLAILNEEIEHESWFSEFLGE................................................................................................................................................................. 161
7 -13.900[C] COG1592 Rubrerythrin  ali follow..  22  2.......GTLENLVKAFIGESMARNRYTFYAKVAKDVFIQRVFLETAENEKEHAENLLKFI-QQLRGDNAAIKVEAEAPLVWGTTVENLKAAIEGEHYENSEMYPQFADEAEKEADRLRAIGKAEEHHERRYRRLLAE................................................................................................................................................................. 139
8 -13.500[H] COG2941 Ubiquinone biosynthesis protein COQ7  ali follow..  14  35LSEKDSNILDSVIRVDQAGELGANQIYKHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPT-DIAGFALGAGTALLGTKAAMACTEAVETVIGGHYNDQAPEFKEIRSHLAEFRDDELEHLN......................................................................................................................................................................... 181
9 -13.500[R] KOG4061 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5  ali follow..  14  35LSEKDSNILDSVIRVDQAGELGANQIYKHFILQFTDPKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPT-DIAGFALGAGTALLGTKAAMACTEAVETVIGGHYNDQAPEFKEIRSHLAEFRDDELEHLN......................................................................................................................................................................... 181
10 -12.700[P] COG2193 Bacterioferritin (cytochrome b1)  ali follow..  16  1..MKGDTKVIERLNEALFLELGAVNQYWLHYRLLNDTKLAKKERAESIEEMQHADKIIDRIIF-------HPNLQTLAPLRIGQNVKEVLEADLAGEYDARTSYKKSRDICSEAGDYFEALLIDEEGHIDFLETQLEL................................................................................................................................................................. 140
11 -11.400[P] COG3546 Mn-containing catalase  ali follow..  13  134..IDTIGEVTADLRSNIAAEARAKIIYERLINLTDDPGVKDTLSFLMTREVAHQLSFEKALYSIRNNFPPG.................................................................................................................................................................................................................................... 202
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.