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Query: [R] COG1827 Predicted small molecule binding protein (contains 3H domain), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KHGCTLEDIEYHLPEFKEPLVRKIGVSDGGELERFLKILERDPARKSSLKRIYESVSGIHSHWISGPDRESIDAVIDELKSEGILLGVNLNDEEIKEVARKHGRLVEIIIKPEMSIVENHGVDDIRREAEIIINHGCTIEDIEYYLPGFSEPLRRNVGVSSMEEIDSFMKTLKSEPRKLESLDRLYTLSGGGIHSHRISGPDSKSLELVERELREEGFLIGVNLELSEIKSIIQESGRVVEMLLKHDLGNMDDKEIIIRRGGRILDSKHYLPGVKQVVTRNLNIRNMDDLKRCMEELENPDARRSLKALYSISRNIHSHTVAAADIKIIMKIEDDLRKRGILLGVNLREDEIWEIVESEMMEKFCIELast
1 -114.000[R] COG1827 Predicted small molecule binding protein (contains 3H domain)  ali  100  1KHGCTLEDIEYHLPEFKEPLVRKIGVSDGGELERFLKILERDPARKSSLKRIYESVSGIHSHWISGPDRESIDAVIDELKSEGILLGVNLNDEEIKEVARKHGRLVEIIIKPEMSIVENHGVDDIRREAEIIINHGCTIEDIEYYLPGFSEPLRRNVGVSSMEEIDSFMKTLKSEPRKLESLDRLYTLSGGGIHSHRISGPDSKSLELVERELREEGFLIGVNLELSEIKSIIQESGRVVEMLLKHDLGNMDDKEIIIRRGGRILDSKHYLPGVKQVVTRNLNIRNMDDLKRCMEELENPDARRSLKALYSISRNIHSHTVAAADIKIIMKIEDDLRKRGILLGVNLREDEIWEIVESEMMEKFCIE 367
2 -15.200[K] COG1654 Biotin operon repressor  ali follow..  15  1...................................MKDTTVPLTLISLLAD-GEFHSGEQLGERLGMSRAAINKHIQTLRDWGVDVFTPGKGYSLPEPIQLLDADRIHSQLDSGNVAV......................................................................................................................................................................................................................................................... 83
3 -9.940[K] COG2378 Predicted transcriptional regulator  ali follow..  11  1.................MPTDNVVSVVSPYHMMYNMRKASRLFEIIQILRLARRPVTAQTIADMLEVTARSVYRDIAALQTMRVPIEGERGGYILRPGFNLPPLMFSIEETEAIVLALAMVDRSGDAELRQAAKKVSDKIAASLPEPLSKTLSANALHAWAPAPAGIDLATVRRAVRDEERLDLCYSDESGVETQRRI......................................................................................................................................................................... 186
4 -8.850[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  14  1................................MELSPVFARRLYLALLVESLER-PNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDGRR................................................................................................................................................................................................................................................................................. 61
5 -7.600[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  1...................MKQEEMLKKLEDLLKAIGLKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNLYRRGL........................................................................................................................................................................................................................................................................................... 65
6 -7.520[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  16  8.............................REIINDMDTLKRHISVINVLLR-EQPIGIIKLSQETGIPEHKIRYSLRILEQENI-ISPSREGAILTP.............................................................................................................................................................................................................................................................................. 73
7 -6.710[H] KOG1536 Biotin holocarboxylase synthetase/biotin-protein ligase  ali follow..  280................SAPNKRNYLQEMENNLAHHGMHANNVELCSELNAETDSFQFYRGYRASYDAASSSLLHKEPDEVPKTVIFPGDEDIPPFQYTPNFDMKEYFKYLNVQSLLLYGEVVTSTSTILNSLLSSIPESTLLHVTIQVSGRGRGGNTWI-NPKGVCASTAVVTMPLQSPVTNRN-----------ISVVFVQYLSMLAYCKAILSSDIPVRIKWPNDLYALSPTYYKRKNLKLVNTGFEHTKLPLG-LKISGLLVNTHFINNKYCLLLGCGINLTSDGPLQTWIDILNEERQQLHLDLLPAIK----AEKLQALYMNNLEVILKQFINYGA----------------AEILPSY... 617
8 -6.580[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs  ali follow..  11  5......................SLDRAANSPLIQQVYMQIRKKILSGELMAAEKLPSTRQLADLLGISRNVVLEAYDQLLAEGFLVSKRGAGTFVAEGAYLPSGKSIAFQKVT------NKEEVMSEPSIIQFRSGIPALDLFLTQSICYEVEASAFNYDVPQGRPELREALSKYVKNARGIECHPEQI-------VITTGATQAFTLASKLLVSPGDELVIEDPITSDIQVIFTNHGAKLIPVPVDDSGIQTCLLPQDTKPAFVFVTPSHQFPLGGV---LSIQRRVELIQYVEDDYDSEFRYEGAPIPSLQG-LYVGSFS-------KLLSPSLRLGYLILPPEFIDDLHTPSLNQLVLARFIQE 355
9 -6.470[R] COG2514 Predicted ring-cleavage extradiol dioxygenase  ali follow..  15  15............................................................................................................................................................LTIRSLERSLQFYCNVIGFQVLKKTDRQAELTADGGLYHFAILLPDRKELGIALARLIEHGIAIGHGDHAVEALYLSDPDGNGIEMYADRPRSTWQDIEGLLEEAGDERKTSLPNDTIIGHIH--LHVSDLKEAKAFYTDVVGNYAGMSALFVSA-ASGLDYYTVVLPHQEELDLVANRVKHAGYSIEETENSFRVKD--VSGAYITFVI. 285
10 -6.050[K] COG4742 Predicted transcriptional regulator  ali follow..  3.............................SELIDVVFRSQKRRDLLLLLGE--EPRTMEDIKVLLDVSPTAILPQIKRLTDSNL-VIQKNGSYELTDMGEQVFKKARALVDVLTLVEIEHDLGGIPQYLLDKIGE---IKDCNLVKADPSQIFEPNTELLEYFASSRYLMVFS-SFYRPEFLPLYSKLGRLESEVSLIF--TESVLEKFLYNYEKKIRRLATMDNTELCVCKDGVKIAELIVS-----DRGMMISLFDSQGRFYHEYMYCSEELFDFYESRALRVDGEKSLDSFICTPESGAFS-----ESLLLSLH.................................................. 284

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.