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Query: [K] COG1959 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVELast
1 -75.900[K] COG1959 Predicted transcriptional regulator  ali  100  1MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE 141
2 -13.000[K] COG1654 Biotin operon repressor  ali follow..  26  6...........VPLTLISLLADGEFHSGEQLGERLGMSRAAINKHIQTLRDWGVVFTVPGK--GYSLPEPIQLLDADRIHSQLDS........................................................ 78
3 -11.400[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  20  23...........EIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNLYRRGLLKRELVQSGW............................................................................. 75
4 -11.200[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  18  1..MKMKTLFLLIKLAKMGAIGKEITVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKG.............................................................................. 61
5 -11.000[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  16  1MELSPVFA---RRLYLALLVESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIEDGRRHNDGYYQLS......................................................................... 70
6 -10.500[S] COG4861 Uncharacterized protein conserved in bacteria  ali follow..  14  141...NPFTPKRAQVVCVLLDAPQLVDAPLRAIAASAGVSVGMAKETMDTLRTTGFFEH---LGSRRRLVRTDELLD.................................................................. 209
7 -10.200[K] COG0640 Predicted transcriptional regulators  ali follow..  19  1...........................MNEITMQTQADQPKVSSNLAILSEARLVDSIQGREKIYRIAPEK----FEDMVDWLDSIL...................................................... 57
8 -10.200[K] COG2378 Predicted transcriptional regulator  ali follow..  14  17MYNMRKASRLFEIIQIL--RLARRPVTAQTIADMLEVTARSVYRDIAALQTMRVIEGERG--VGYILR---PGFNLPPLMFSIEETEAIVLALAMVDRSGDAELRQAAKKVSDKIAASLPEPLSKTL.............. 137
9 -10.200[K] COG1725 Predicted transcriptional regulators  ali follow..  24  21...........KQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM--GSFVTSDKALFD.................................................................. 82
10 -9.560[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  13  19...........RHISVINVLLREQPIGIIKLSQETGIPEHKIRYSLRILEQENIISPSRE---GAILTPDFIEH................................................................... 78
11 -9.350[K] COG1802 Transcriptional regulators  ali follow..  17  13..LRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVA------VHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVL... 143
12 -9.120[K] COG2188 Transcriptional regulators  ali follow..  17  1MIDLPDTASPLYEKVK-RWGKDRKLPSENELVASLGVSRMTVHRALRELTAAGFLIRLQGV--GTFIAPPRPQSTLIEINNIAAEIV...................................................... 94
13 -9.080[K] COG1321 Mn-dependent transcriptional regulator  ali follow..  15  3LMHTDRIEEYLETILYLI-TKNQGPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYK--PYQGVELTEKGAEEAV-RIKR............................................................ 79
14 -9.040[K] COG1497 Predicted transcriptional regulator  ali follow..  13  1MKALRKKGELTRFQILSEIAMRQPYVRQKDIADKLGVTVQAVSENIKSLIAEGLVES-GSGRSHYKITRRGAE.................................................................... 72

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.