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Query: [C] COG1969 Ni,Fe-hydrogenase I cytochrome b subunit, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWWQGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMVNGYRSHKFGKISNKERSLast
1 -118.000[C] COG1969 Ni,Fe-hydrogenase I cytochrome b subunit  ali  100  1MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWWQGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMVNGYRSHKFGKISNKERS 235
2 -76.000[C] COG3658 Cytochrome b  ali follow..  16  3........NKTKVWDFPTRLFHWLLAASLPFMWYSAKTGGD-----------------MLQWHTRVGLFILFLLVFRLCWGIWGSDTARFSRFVRGWSG---------IREYMKNGIPEHVQPGHNPLGALMVVALLAAVSFQVGTGLFAADENTF------STNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAVHIAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGK 197
3 -73.200[C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)  ali follow..  14  46PKTAGGEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSL----------GPVALMVQVHTWCGFALLAFWVGFVLINLTTGNGRHYRVN----FSGLVTRCIRQTRFYLFIMKGEAHPFVATEQNKFNPLQQLAYLAIMYALVPLLIITG-----------LLCLYPQVAGLGPVMLVLHMALAIIGLLFICAHLYLCTLGDTPGQ--IFRSMVDGYHRHRTAPRGDKSA. 253
4 -56.300[C] COG2864 Cytochrome b subunit of formate dehydrogenase  ali follow..  16  3.KIEISNDTRIIRHRTPARISHWMLVICFFMTMFTGVAFFFPDFAWLTEILGT--PQIARAIHPFTGILMFFAFIYLALLYWDH-----------IPEKNDIRWAKGVIEVLKGNEHAVADNGKYNLGQKMLFWTLNLAMVTLLVTGIIMWRQYFSH-------------YFSIPVLRIAILLHSASAFMLFTGILVHIYMAFW-----VKGSIRGIVEGWVTVRWAKKHHP... 203
5 -49.200[C] COG3038 Cytochrome B561  ali follow..  13  1MTLKGTAER----WDWMSQALHWLIAVLILGLGIGGLIMGN--------LPKTPNYFWVYTAHKSTGISVLALAVLRLLWRLYVGAPK----------------------------PIAGPPVWQERVANATHIMLYVLIFTIPLAGWLYDSARGLR-YWFGLFEMPALVSPNETIRGVALEIHKLSFWALIGLVVLHAGAAFYHHLIQRDATLARMLPRNWFSSKS........ 188
6 -14.000[C] COG2181 Nitrate reductase gamma subunit  ali follow..  14  52...................LFHW--LLCVVGGHVMGILIPEGVYASLGISEHMYHK-MAIGAGLPAGIAACTGLVILTYRRLFDKRIR---------------------------------------TSSPSDILTLLLLLFMMLSGVAATFLNIDSKGFDYRTTVGPWFREIVESVPLWFKFHIVIGYVVFILWLVHVFSLPLKYLTRSYVVYRK................... 221
7 -12.600[C] COG1290 Cytochrome b subunit of the bc complex  ali follow..  12  1MSADHSTYTPTT------GIEKWVLSVMLIVQILTGIVLAMHYAAETSVAFNSVEK-LLRYLHANGASFFFIAVYLHIARGLYYGSYKAPREIL------------------------------------ILGVVIYLLMMATGFMGYVLWGATVITGFFSAFPLVGEWIQQFLLGGFAVDSLHYLLPFMIAGVVVLHIWALHVTG............................. 220
8 -11.300[C] KOG4663 Cytochrome b  ali follow..  15  35.......................LLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEH-ILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTL------------------------------------NVGVIIFILTIATAFLGYCCWGATVITNLFSAIPFVGNDIVSWLWGGFSVSALHYLVPFIIAAMVIMHLMALHIHG............................. 205
9 -11.200[T] KOG4293 Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains  ali follow..  11  245....................AHIALQTTGFLLGLTGVICGL--------VLENRLKANNVSKHKGLGITILVMGVLQMLALLARPD------------------------------KQSKYRKYWNWYHHNIGRLLIILAISNIFYGIHLAKAGTSWNGGYGF----------------------AVAVLALTAIGLEVRKAISSDMKEKFSALEGRVSGLESGGYENPNPAQVS 444
10 -9.840[O] COG5264 Vacuolar transporter chaperone  ali follow..  12  110LRVSGPIKVEAKVWLANERTFKWLHVVVLLGSLALALY----------------------RLGQAFGVVYTLLAIFIGFYAWK---------------------LHAKRSQMIKSRSPAPMTDYWGPL------IVGTALAISLIVNMSF..................................................................................... 216
11 -9.510[S] COG3182 Uncharacterized iron-regulated membrane protein  ali follow..  8  1MSTVTTPQPTAAARRKTLY-WHYAVVPFMLMLALTGLARYAEVLNVTPQAQVMPVSQQLAAVQKAYPEAQVTQFIPLANRFSVLFSDGSTQFVTVSPYSAVVLGAIDRSESWYEWANSIHGTLLIGDWGDYLIEVAASLGMILLVSGIYLWLPLDNARKAGFL-----KIRVGSGARIFWRDLHANLGGMLSLVLLFFLISGLSWAGIWGGKLVQAWNTFPTYYTWGEKPQSVLT 253
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.