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Query: [R] COG2005 N-terminal domain of molybdenum-binding protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINDMNQLSEHMLVERATGGKGGGGAVLTRYGQRLIQLYDLLGQIQQKAFDVLSDDDALPLDSLLAAISRFSLQTSARNQWFGTITARDRDLVQQHVDVLLADGKTRLKVALTAQSGERLGLEEGKEVLILLKAPWVGITRDAAVARAADNQLSGTISHIERGAEQCEVLMALPDGQTLCATIPTSDAATLKEGDDVIAWFNADRVIIATLCLast
1 -107.000[R] COG2005 N-terminal domain of molybdenum-binding protein  ali  100  1MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINDMNQLSEHMLVERATGGKGGGGAVLTRYGQRLIQLYDLLGQIQQKAFDVLSDDDALPLDSLLAAISRFSLQTSARNQWFGTITARDRDLVQQHVDVLLADGKTRLKVALTAQSGERLGLEEGKEVLILLKAPWVGITRDAAVARAADNQLSGTISHIERGAEQCEVLMALPDGQTLCATIPTSDAATLKEGDDVIAWFNADRVIIATLC 262
2 -25.600[H] COG3585 Molybdopterin-binding protein  ali follow..  27  2................................................................................................................................................................................................TIKAINVRNQFKGTVKEIIEGPVLSEIDVQT-AAGIVTSVITTRSELELAIGSEVIAFVKSTEVSIAKL. 71
3 -12.400[P] COG4148 ABC-type molybdate transport system, ATPase component  ali follow..  17  13HCLTINETLPANGITAIGAGKTSLINAISQKGRIVLNGRVLNLRYGMAKSMVDQFDKLVAEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLKRELLPYLQRLTREISHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEV-GGKTLWARISPWAELAIKPGLWLYAQIKSVSIT..... 351
4 -11.800[K] COG0583 Transcriptional regulator  ali follow..  11  5................LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHA-----RGLILTEQGETLYRTAHDVLMKLENVRSKLAESR----EKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDVQLQLILDNEELDLTMRHADCAVRLRQPQQPDLIQRRLFIVHMHVYASAG.................................................................... 173
5 -11.500[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  15  1................MKMKTLFLLIKLAKMGTMRELSRELDVSPQTVLRWLEELKEQ----YIHKRESRKG---VELTEKGINLLEKLYEEISTALYSGFIVGEVISGIGEGAYYVRQYAPLIRE----------YLGFDPYPGTLNVRVLFPKTIFDALCTARPIIIPGFTRNGRTFGDVRAYRVRI-----------DGIEGAIVIPSRTVHPPKIA-------EIIAPVKLRDALNLKDGDKVRIEV........... 211
6 -11.000[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  8  16.................SELRRKVLFYLLSIYYLSEISRAVKSDPSNVKGCLEGLESLIGLGLVIVEQSKNGFKYFKINPEIVEEVRNMKNMFSDKKVYTVE................................................................................................................................................................ 111
7 -9.810[K] COG3432 Predicted transcriptional regulator  ali follow..  16  41.....................FDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKV----ALNIKTENDR----EITEKGKLLRTHIEEFIKIRENL................................................................................................................................................................... 114
8 -8.860[K] COG4190 Predicted transcriptional regulator  ali follow..  18  66...............TLTPRVLELIEAIRQEESINETARVVDRDVKNVHEELSRLAHL----IIFFEEDGQ............................................................................................................................................................................................... 120
9 -8.550[K] COG4742 Predicted transcriptional regulator  ali follow..  10  12.................SQKRRDLLLLLGE--TMEDIKVLLDVSPTAILPQIKRLTDS----LVIQK-----NGSYELTDMGEQVFKKARALVDKDNYWIEHDLGGIPQYLLDKIGEIKDCNLVKADPSQIFEPNTELLEYFASSPLYSKLGRLESEVSLIFTESVLEKFLYNYEKKIRRLATMDNTELCVCKDG----------KIAELIVSDRGMMISLFDSQGRFYHEYMYCSEPQAISWARELFDFYESRALRVD... 258
10 -8.430[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  14  18..................KRHISVINVLLREQPIIKLSQETGIPEHKIRYSLRILEQ---ENIISPSREG-----AILTPDFIEHKEQIIADAEKVLEEATKIAEDVRK......................................................................................................................................................... 102
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.