FFAS03 results for COG2101

Query: [K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180`
#	Score	Template	Links and tools	%id	First	`MSEREKITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLI`	Last
1	-83.000	`[K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB`	`ali`	100	1	`MSEREKITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLI`	184
2	-71.700	`[K] KOG3302 TATA-box binding protein (TBP), component of TFIID and TFIIIB`	`ali follow..`	37	18	`.PSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPA-KFKDFKIQNIVGSCDVKFPIRLEGLAYSHS-AFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREF...`	195
3	-7.320	`[OC] KOG1672 ATP binding protein`	`ali follow..`	14	46	`......................RIAALKREVEKRESFKRQGHGEYREVSEGDFLGEVTRSEKVICHFYHKEFYRCKIMDKH---------------------------------LKTLAPRHDTKFIKVDAENAPFFVTKLAIKTLCVVLFSKGVAMLVGFQDLGTKDDTTNKLENVLLKKVRE`	179
4	-6.700	`[R] COG2823 Predicted periplasmic or secreted lipoprotein`	`ali follow..`	14	76	`...........................................................QGKVLLVGQSPNAELSARAKQIAMGVDG------------ANEVYNEIRQGQPIGLGEAS-----NDTWITTKVRSQLLTSDLVKSSNVKV-ENGEVFLMGLVTEREAKAAAD-VKRVTTAFTFI`	190
5	-6.640	`[T] KOG3170 Conserved phosducin-like protein`	`ali follow..`	8	134	`..................................................................................................................LSGLARKFP--DVKFIKANSTTCIPNYPDRNLMVFVYLEGDIKLIGPLVFGGMNLTRDELGWKLSESRAV`	204
6	-6.260	`[R] COG3054 Predicted transcriptional regulator`	`ali follow..`	15	58	`...........................................................AGKVRVL--AGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMF-IESNKKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLKDGRVQ-DGALTQQEVQQVVDLLHKLLSK....`	185
7	-6.090	`[B] KOG0264 Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1`	`ali follow..`	8	136	`.........PHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW.`	324
8	-5.580	`[K] KOG2240 RNA polymerase II general transcription factor BTF3 and related proteins`	`ali follow..`	14	3	`..........................................................................QEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASL-SANTFAITGHAEAKPITEMLPGILSQL......`	105
9	-5.490	`[S] COG3831 Uncharacterized conserved protein`	`ali follow..`	8	1	`................................................................................................................MGTHHYQLYCQRIDANRNMARYYALAIRPTLFGEIAVVRSWGRIGKAGGENDNDAISRFLELVLQKRKRGY.`	77
10	-5.190	`[O] KOG0910 Thioredoxin-like protein`	`ali follow..`	17	117	`..................................................................................................................MEALSQEYGDK-VKIDHDANPKLIAEFKVYGLHFILFKDGKEVREGAITKAKLKEYIDGLLN........`	185

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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