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Query: [K] COG2186 Transcriptional regulators, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNGQAKIAEPRRLYQQIADQIRELIDVGEFLPGTRLPAERELAQKLGVSRPSLREALIALEIDNTVEIRMGSGVYVSTEALQTTHHTKSLGDSPSELMQARAALEGATIVLAANRMTDETIAALRQILNTMQKEIEAGRKPLDQDRLFHVTIAEQSGNSVLARLVANLFDERHSPISAQLRVKFEDRDTWTRALQEHEAILAALELKDPLLAQAAMHIHLEGSKRRWVDSLast
1 -95.400[K] COG2186 Transcriptional regulators  ali  100  1MNGQAKIAEPRRLYQQIADQIRELIDVGEFLPGTRLPAERELAQKLGVSRPSLREALIALEIDNTVEIRMGSGVYVSTEALQTTHHTKSLGDSPSELMQARAALEGATIVLAANRMTDETIAALRQILNTMQKEIEAGRKPLDQDRLFHVTIAEQSGNSVLARLVANLFDERHSPISAQLRVKFEDRDTWTRALQEHEAILAALELKDPLLAQAAMHIHLEGSKRRWVDS 230
2 -61.400[K] COG1802 Transcriptional regulators  ali follow..  28  1MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERL-IERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISRQ----------EAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDKVLKAKTDLYDVLLDNCGNGLVKETLTSL----HSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAERHVANAKEVALRILEET 217
3 -30.100[K] COG2188 Transcriptional regulators  ali follow..  23  2...IDLPDTASPLYEKVKDYILANIGTGRWGKDRKLPSENELVASLGVSRMTVHRALRELTAAGFLIRLQGVGTFIAPPRPQSTLIEINNIAA--EIVERGNRHRSEVLVLETIMPTKELALSFE......................................................................................................... 121
4 -27.900[K] COG1725 Predicted transcriptional regulators  ali follow..  25  7........ADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKEL---------ADAITERFLEEAKSIGLDDQTAIEL.......................................................................................................... 113
5 -20.300[KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs  ali follow..  32  2LWISLDRAANSPLIQQVYMQIRKKILSGELMAAEKLPSTRQLADLLGISRNVVLEAYDQLLAEGFLVSKRGAGTFVAE........................................................................................................................................................ 79
6 -11.900[K] COG1654 Biotin operon repressor  ali follow..  25  9...................TLISLLADGEFHSGE------QLGERLGMSRAAINKHIQTLRDWGVVFTVPGKGYSLPE........................................................................................................................................................ 62
7 -10.800[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  12  36.......................................IKLSQETGIPEHKIRYSLRILEQENIISPSRE-GAILTPDFIEHKEQI---IADAEKVLEEATKIAEDVRKMLEKK................................................................................................................... 107
8 -10.200[K] COG1846 Transcriptional regulators  ali follow..  21  58.....................................LMKELAERLGVTKGAVSQLVDRLEAKALVRRTA--------HPKVSRGIQVVLTDKGREAYRAHADMHAAFYEELQQSFTKEEIAIFEQCVSKLRDILSE............................................................................................. 149
9 -9.860[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  20  251..................CEVLDIIRGH----KGRI-TQKDLRSKLDYSEVKVSLMLSELEKRGLIRLRNGRENILV......................................................................................................................................................... 305
10 -9.780[K] COG2345 Predicted transcriptional regulator  ali follow..  17  1MGDVVKGNDAHTGDGDTRRKILLILLERA--------IASDIAEQLQLSTVGVRRHLDNLVEENLAEAA................................................................................................................................................................. 63
11 -9.700[K] COG2378 Predicted transcriptional regulator  ali follow..  12  23.................ASRLFEIIQ---LRLARRPVTAQTIADMLEVTARSVYRDIAALQTMRVIEGERGVGYILRP----NLPPLMFSIEETEAIVLALAMVD-RSGDAELRQAAKKVSDKIAASLPEPLSKTLS---------ANALHAWGSIAPAPAGIDLATVRRAVRDEERLDLCYSDESGVETQRRIRPIAVIYYS........................... 195
12 -9.470[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  4YEKEIDELINDYDMLRVLKHFTIA-------------YAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTSIKRTEAKLKKSAEVHKHHTYYQINKKAEAVLKEITPKLYVHHLKSADLQML.......................................................................................................... 117

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.