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Query: [P] COG2193 Bacterioferritin (cytochrome b1), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKGDTKVIERLNEALFLELGAVNQYWLHYRLLNDWGFTKLAKKERAESIEEMQHADKIIDRIIFLEGHPNLQTLAPLRIGQNVKEVLEADLAGEYDARTSYKKSRDICSEAGDYVSMKLFEALLIDEEGHIDFLETQLELLGKIGAEKYGQLNADSANEAELast
1 -74.200[P] COG2193 Bacterioferritin (cytochrome b1)  ali  100  1MKGDTKVIERLNEALFLELGAVNQYWLHYRLLNDWGFTKLAKKERAESIEEMQHADKIIDRIIFLEGHPNLQTLAPLRIGQNVKEVLEADLAGEYDARTSYKKSRDICSEAGDYVSMKLFEALLIDEEGHIDFLETQLELLGKIGAEKYGQLNADSANEAE 161
2 -51.900[P] COG1528 Ferritin-like protein  ali follow..  17  2..LSQAIAEKLNEQINLEFYSSNVYLQMSAWCAHHGYEGAAAFLLRHADEEMEHMQKLFNYVSETSGMPLLGKIEPKNDYKTLKEIFEITLEHEKFVTSKINELVEVTFAHKDYSTFNFLQWYVAEQHEEEMLFNSIIDKFNLLGEDGRSLYFIDRDLAT. 160
3 -48.900[R] COG2406 Protein distantly related to bacterial ferritins  ali follow..  20  16...VDKLLELLIKNAAAELTTYYYYTILRANLIGLEGETIKEIAEVARIEDRNHFEALVPRIYELGGKLPDCMKERLPDKPTVQEILRVLVAAERCAVKGYTEICNMTAG-KDHRTYELSLAILNEEIEHESWFSEFLGEGP................... 163
4 -38.900[C] COG1592 Rubrerythrin  ali follow..  19  2.....GTLENLVKAFIGESMARNRYTFYAKVAKDEGYVFIQRVFLETAENEKEHAENLLKFIQQLRGDNAAIKVEAEAPLVTTVENLKAAIEGEHENSEMYPQFADEAEKEGFKDIADRLRAIGKAEEHHERRYRRLLAEVENGTF............... 145
5 -28.600[P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant)  ali follow..  16  11.ADRIKIAESLKKLLADTYTLYLQTHNFHWNVTGPQFRDLHLMFEEQYNELALAVDDIAERIRSLDVFAKLSSVQEVDGIPTSKEMVDILTKGHETIVQSCRDVLKCSQPADDESTIALASDRMRVHEKTAWMLRAMNK...................... 156
6 -27.600[S] COG1633 Uncharacterized conserved protein  ali follow..  18  12VRNLKGIEEAIALAIDREKEAREFYLQQAGLMEN---PKFKELYEELAAEEMKHLGYLENYRDKKELPEISTEVKVGEITLGDAGILLAAMRHERKSEDFYSEM---AKRVEDETQKKFFEMLSRYERGHYEVIDSYLEYITQ.................. 163
7 -27.400[P] COG3546 Mn-containing catalase  ali follow..  17  16.EPNPGLANLLLEQFGGELAAACRYFTQGLSDDD---AGRREMLMDIATEELSHLEIIGSLVGMLNKGAKGELAEGIDTIGEVTADLRSNIAAEARAKIIYERLINLTD---DPGVKDTLSFLMTREVAHQLSFEKALYSIR................... 196
8 -22.600[S] COG4902 Uncharacterized protein conserved in archaea  ali follow..  13  45.PLSDEEANSLLYMIEEEKLARDVYLKLYNETG-------LIIFDRIAQSEQRHMDAVLMLIEKYNLTAPDTLNEIEMGSQSVVDALKVGALIEEIDIKDLEEW---LSKVDNEDIKVVFENLMDGSKNHLRAFTKVLADNYGIE................ 194
9 -21.300[S] COG2833 Uncharacterized protein conserved in bacteria  ali follow..  11  76LNTEHGRIALMHALAHIELNAIDLALDIVARFAVKPIPSFFDGWMKVADDEARHFTLLRNRLKSLGADYGDMPAHDQTRNDLEARLAVVPLILEARGLDVTPSLLEKMIETGDHETAAILNIIYNDEKTHVAVGAKWFRFF.................... 224
10 -18.500[S] COG3685 Uncharacterized protein conserved in bacteria  ali follow..  17  3.TANEHLVAWLRDAHAMEEQAITMLTSQSSRLEN--YPELKTRIDRHLQETKDQAAMLERCLERLDGGTSGQGLSGLFVSDEVVKGTLASYTFEHMEIASYRILIAAAEQAGDQETKRVCESILQQEIAMAEWLAQNAGEI.................... 152
11 -16.700[H] COG2941 Ubiquinone biosynthesis protein COQ7  ali follow..  15  38.KDSNILDSVIRVDQAGELGANQIYKGQHFILQFTD-PKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTF-ALGAGTALLGTKAAMACTEAVETVIGGHYNDQLRETKAPEFKEIRSHLAEFRDDELEHLN............................. 181
12 -16.700[R] KOG4061 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5  ali follow..  15  38.KDSNILDSVIRVDQAGELGANQIYKGQHFILQFTD-PKVAPTIQHMWDQEKYHLATFDNYVLKNRVRPTF-ALGAGTALLGTKAAMACTEAVETVIGGHYNDQLRETKAPEFKEIRSHLAEFRDDELEHLN............................. 181
13 -15.600[S] COG3461 Uncharacterized conserved protein  ali follow..  22  12LTGKDRDFVRALNSLKEEIEAVAWYHQRVVTTKD---ETVRKILEHNRDEEMEHAAMLLEWLRRNM............................................................................................... 74
14 -13.800[S] COG3396 Uncharacterized conserved protein  ali follow..  26.AYRKTLIRQIGQHAHSEIVGMLPE---GNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLADIGVIGWLVDNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQ........ 181
15 -12.700[S] COG1814 Uncharacterized membrane protein  ali follow..  16  3TTSNSKLVEVARKAALDEYKEYVTYSVLARVERN---KARRAVLERLAEQEREHFQFWNKFAGV---RLYAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAEPLLSGPDREA-----LRRIIKDEEEHERALIAQLDE..................... 138
16 -10.300[P] KOG2332 Ferritin  ali follow..  20  10QNYHQDSEAAINRQINLELYASYFNLSMSYYFDDAALKNFAKYFLHQSHEEREHAEKLMKLQNQQEC----------------------ALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQ-----NWVNVTNLHKMGAP.............. 131
17 -10.000[FJ] COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA  ali follow..  94....AFRQGPEPDFVALHKQISKSAMPQTDDPWG---RQLIDRMVLLIKEELHHFWQVREVMQARN-AKGMLKAVRTHEPLTLIDKLICGAYIEARSCERFAALAPWL----DEDLQTFYLSLLRSEARHYQDYLALAQQI.................... 233
18 -9.120[M] COG5577 Spore coat protein  ali follow..  11  1MQLASHELHDLHELIVSCVNSITNMAMFRNMVQD---QDLKNILNSHFPAHIQDYNMKVEFVKKAQPANSFPPIAPRTDVQKMNDIATAYLLTLKRAGREYAWSAMEMS---NPEIRQFLKDAFTMSCNHAYDVWQWMVQ..................... 157

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.