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Query: [J] COG2511 Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEKYDYSELGLKAGLEIHQQLDSKEKLFCRCPTLIRDIGDSDFEFFRYLRATESEMGEKDRAAVEQTKIRRKYIYKAYDTTCLIENDEEPPRELNKEALDISLGVSKLFNMKPVDQMHVMRKIVVDGSNTSGFQRTAFLASDGYIETSEGRCGIDSLCVEEEAAQKIEEKGDSIVYSLDRLGIPLVEIATAPDIRSPRHAREVAEYIGMVLRSTGKVKRGLGTIRQDVNISIARGERVEIKGVQALDLIEDIVRREVERQLNLLFIRQELLERKAFVCEEIYDVTGLFMDTKSKVLQKGVKKGSILAALLKKFNRLVGKEVQPGRRLGTEFSDRAKTAGVGGLFHTDELPNYGITEKEVQAVKDAIGAGPEDAFVMVADEPEKARLAIEAVINRAKEAIEGIPEETRKALPDGNTAYMRPLPGAARMYPETDVPQIEISQEYFDSIKPPELLTKRAKRFASESGLNKELAEKVAYSRYLPLFEILLETYTKDANVNSTLIARTLVGIVPEIRRNGVETDNLTDEHFKGLFAAISNQEIAKEAIQDLLTALAKEPELTVQEAISKLGLSAFDPEEVENFIKQMVMEKGDFIKDKGPSALGPLMGIVMKEYRGTVDGKILSHMLKKEIDNFIGQGLast
1 -203.000[J] COG2511 Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain)  ali  100  1MEKYDYSELGLKAGLEIHQQLDSKEKLFCRCPTLIRDIGDSDFEFFRYLRATESEMGEKDRAAVEQTKIRRKYIYKAYDTTCLIENDEEPPRELNKEALDISLGVSKLFNMKPVDQMHVMRKIVVDGSNTSGFQRTAFLASDGYIETSEGRCGIDSLCVEEEAAQKIEEKGDSIVYSLDRLGIPLVEIATAPDIRSPRHAREVAEYIGMVLRSTGKVKRGLGTIRQDVNISIARGERVEIKGVQALDLIEDIVRREVERQLNLLFIRQELLERKAFVCEEIYDVTGLFMDTKSKVLQKGVKKGSILAALLKKFNRLVGKEVQPGRRLGTEFSDRAKTAGVGGLFHTDELPNYGITEKEVQAVKDAIGAGPEDAFVMVADEPEKARLAIEAVINRAKEAIEGIPEETRKALPDGNTAYMRPLPGAARMYPETDVPQIEISQEYFDSIKPPELLTKRAKRFASESGLNKELAEKVAYSRYLPLFEILLETYTKDANVNSTLIARTLVGIVPEIRRNGVETDNLTDEHFKGLFAAISNQEIAKEAIQDLLTALAKEPELTVQEAISKLGLSAFDPEEVENFIKQMVMEKGDFIKDKGPSALGPLMGIVMKEYRGTVDGKILSHMLKKEIDNFIGQG 633
2 -103.000[J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)  ali follow..  20  11.....IMNFETVIGLEVHVELSTNSKIFSPASTKFGGDPNTNT-----------------------------------NVIDWSLPGVLPV--MNKGVIDSGIKAALALNMDIHKSMHFDRKNYFYPDNPKAYQISQFIGYNGSIEIHKATIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMRTPEEAYAYLTALKEAILYTGISDVKMGSMRCDANVSLRPGVKTEVKNMNSFSNVKKALDFEVDRQAKILRAGGEIRQETRRFNDKTGETI---------------------------------------------------------------------------------------------------------------------------------LMRVKEGASDYRYFPEPDVPRFEISEEWVEQMRLPMTAKARRAHYINDLALSDYDARQLTATKEVSDFFDQAIKFDTDPKLVSNWLQGEVAQYLNSEKKE-LHEIGLTPENLTEMIRLISDGTISSKIAKKVFIELAKNGGSAEEFVKKAGLVQISDPAVLLPIIHDVFAKNEQSVADGKQNAAKALVGQLMKATKGQANPTVAQKLLYQELDNF.... 488
3 -90.000[J] KOG2438 Glutamyl-tRNA amidotransferase subunit B  ali follow..  22  68......RDYEAVIGIETHVQLSTLTKAFCSCSNNYGSYPNTSI-----------------------------------CPVCMGLPGALPV--LNSKVVEFGVRLGLALNCDLSLKSKFDRKQYFYPDLPKGYQISQFIASGGYVDVGHRRFGITRVHMEEDAGKLLHSDTDYSQVDLNRAGVPLLEIVSEPDMRSGIEAAEYACEMQRIARYLGVSNGNMGSLRCDVNISIRPGTKVEIKNLNAFSAISRAIDFEISRQALLYNQGK------------------------------------------------------------------------------------------------------------------------------------ADQIVTETRLWETVTMRKKEGLADYRYFPEPDLPEVILTQEYVDSIRLPELPEAKRRRYEAMGLGMQD-VLFLANDVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLS-INDIKLTPQELAELIAAIKDGTISGKIGKEILFELLAKGGTVKGMIKAKDLVQITDPAEIEKMVIQVVSENPKQLRSGKTKLQGYFAGQVMKMSKGKANPGLLNKILLEKLNA..... 548
4 -10.800[S] COG1610 Uncharacterized conserved protein  ali follow..  13  7...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LKEEQKLAMKAKDKPRLGAIRLVLAAIKQR-EVDEQITLSDDDIVAVLTKMVKQRRDSVSQVLEEFMPQPLSDDEVKALIDSAITE----SAAAGMQDMGKVMAVLKPHIQGRADMGKVSGLVRAKLA...... 147
5 -6.150[J] KOG0468 U5 snRNP-specific protein  ali follow..  11  1MDSDLYDEFGNYIGPDLDSDEEDEQS---IYGQPDVQDDPEDAMDEDEVEPQEDEDKEVTAVVLHEDKRYYPSAVEVYGPDVETIVQEEDAQPLDKPLIEPVKKLKFQIKADLMDTPPLIRNVALVGHLHHG-KTTCLIRQTHPQFETMEE--TDTLFTEQERGCSIKATPVTLVLQDVKQKSYLLNIFDTP--------VNFSDEATAAMRMSD------GVV---LFIDAAEGVMLNTERL-----LKHAVQERQAITVCINKIDRLILELKLPPQDAYFKLKHIVEEVNGLLSTYGAPDDNLLVSPILGNVCFASSLYGFCFTLKSFAKLYADTYEGVAYLDFAKR--FNSKTRKFSKKQPHNSAQRSFVEFILEPMYKLIAQVVGDVDTTLSDTLAELNVRVSKEEMKSNIRPL--RLVCNRFMGDCS----GFVDMCVEHIKSPENAKRKVDHIYTGPKEGDIYRDMISCNQYGTLMVHSSKMYPNDDCTFFQVLARIVSGTLHA-NYTLQDEEDSRILQVGRLWVFESRYKVELNRVPYIFRPLKFNTQSIIKIAVE---VNPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGT------GELYLDCVMHDLRKMYSEI.... 654
6 -6.090[B] KOG4012 Histone H1  ali follow..  50.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TMSDVTVAETPAVKTPTKAPKAPKSKTTKEPKAKVAAAHPPFINMVTAAISS----LKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASK 145
7 -6.030[TW] KOG1048 Neural adherens junction protein Plakophilin and related Armadillo repeat proteins  ali follow..  377.........................................................................................................................................................IQHECFQKSEARRVNQLR----------GILLLQLLKVQNEDVQRAVCGALRNLKLEVAELNGVPRLLQVLKQT-NLRSRNGWPGAVAHACNPSTLGGQGGRITRSGVRDQPLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLEAELPEKYSQNIYIQNRNIQTDNNKSIGCFGSRSRKVKEQYQDVPMPEEKSNPKGVEWLWHSIVIRMYLS--LIAKSVRNYTQEASLGALQN----TSVAQTVVQKESGLQHTRKMLHVGDPS-------VKKTAISLLRNLSRNLSLQNEIAKETLPDLVSIIPDTVPSTDLLIETLNNIIQNSYQNARDLLNTGG--------IQKIM-AISAGDAYASNKASKAASVLLLHHAYKK-AQFKKTDFVNSRTAKAYHSLKD.. 881
8 -5.950[C] KOG3976 Mitochondrial F1F0-ATP synthase, subunit b/ATP4  ali follow..  120...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYK--EVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIAD-LKLLAKKA 250
9 -5.880[U] COG4789 Type III secretory pathway, component EscV  ali follow..  12  46..........................................................VDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEV-----SAR----------FSLD--GMPGKQMSIDGDLRDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGI-----VNIIGGIIIAIVQYDMSMEAVHTYSVLSIGDGLCGQ----------IPSLLISLSAGIIVTRVPGEK---------------RQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTL---HSADLIRDIDAMRWFLFED--LPEVNIEVLPEPTEKLTVLLYQE------PVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQR-----QLPINKIAETLQRLVSERVSI------RDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHI... 565
10 -5.730[K] COG5175 Transcriptional repressor  ali follow..  10  37IEPMDITDKNFFCGYQIN-NIRQNPELNGRCPACRRKYDDENVRY----VTLSPE----ELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYVVGINPPVPYE-----------EVAPTLKSEKYFGQYG---------KINKIVVNRKTPHSNNTTSEHYHHHSPGYGV----YIT---FGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKHEPGEEADSFNKRELHNKQQAQQQSGGTAFTRSGI..................................................................................................................................................................................................................................................................................................................................................................................... 287

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24