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Query: [S] COG2855 Predicted membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIALast
1 -105.000[S] COG2855 Predicted membrane protein  ali  100  1MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIA 349
2 -14.200[P] KOG3826 Na+/H+ antiporter  ali follow..  68...................IFVIFILLVAGIFAAKI--SKALRLPPLFGCLALGIIIKNITVFDQFFVFPPFV---ETMIRKVALVMIGLATDIHFLYENALMPVTIGLVTAIGEIIAVTIASYFILNISFVMSIFCALILVTVSPAVTVPAMINFKEKQLGSLKRIPENILAICCVLFCVILFMVLSSIIFTDAPIATTILLNAGSIVFGCIGGIVLGWILWSDAPHTQFARITLLGTICIAVVIGTYLIKYSCSG-----FLAALITSAMSAMQWKA--KLECVESTYKYIWDSFALPLLFICLGMKFDCSTLTWEIVFLCIAVIAIGLLVRTILVMLVTLSSHI.. 397
3 -12.300[P] KOG4505 Na+/H+ antiporter  ali follow..  12  20....................GFTSLFMLCSLIIKE-----KLFLGEATMATATGLIFGKLFVPTSWGNTDYITEELARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIRLSFLESLAIA---ACITATDPVLASSIVGKGKFARRVPGHLRNMLLAES-MAIPFLYLAIYLIIEKPARHAGRDWVCIIILYECTFGCVLGAIIGVIARMIKFSESFLVFYFVLALFCGGIGTIIGVDD---------LLVSFCAGAAFSWDSWFSKKESHVSNVIDLLLNLSFFVYVGAIMPWPQFHMPHMDLSVWRLVVLAICILIARRIPAVL..... 346
4 -11.000[S] COG5505 Predicted integral membrane protein  ali follow..  15  14...................WGFIAVWAAVSIGLEQRFKWASA-VSGAIIALAGAMVFTNVGVLPVESPV---YDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGSASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPALKWF-------------EEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFLNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLF..... 333
5 -9.680[P] COG0475 Kef-type K+ transport systems, membrane components  ali follow..  10  4..............HILINVIILLGTAVFIVAI-----LKRFRLSPVLGYLIAGAAIGDHGLKIVTYD-------QTKLLGELGVVFLGLELSFERLKAMRRYVFGLGSLQVLTTAIVIAGAM-VLIDGNSSAAIITGGGLALSSTALVMQVIDENRSQSTQIGRISLAILLLQDLAVVPLLVIVPLLASNNKASALGIAFLKAVTALLTIFIVGRVLLRPVFSFISSESNNTSELPISMTLLIVLSAAWATETFGLS--------LALGAFVAGVLVAETEFRLQAEESIYPFKSLFLGLFFMTVGMNIDALEMYEKISHILTLSIALICIKTLIITAFCILF..... 319
6 -8.930[P] COG4651 Kef-type K+ transport system, predicted NAD-binding component  ali follow..  13  6..............PLITTIVGGLVLAFILGML-----ANKLRISPLVGYLLAGVLAGPFTPGFVADT-------LAPELAELGVILLGLHFSLKDLMAVKAIAIPGAIAQIAVATLLGMALS-AVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVS---------FALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLF..... 327
7 -8.200[P] COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain  ali follow..  15  25................................................................................LALAIILLGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQHHLQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSGGILIFSLTTALEGSGIL--------------------AVYLCGFLLGNRPIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFN 287
8 -7.820[P] KOG2718 Na+-bile acid cotransporter  ali follow..  13  101..................................................FPIWVSLGCLLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLDDLRGA-PKELFAGFLLQYSVMPLSAFFVSKLLNLPPHYAA----GLILVGCCPGGTASNIVT--RGNVALSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVFVSPVMPPIAVGTVAILCGYAIGQNASAILMSGKQVVLA-FLFGYLFSRILG-------------ASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIW..... 391
9 -7.730[P] KOG1966 Sodium/hydrogen exchanger protein  ali follow..  12  25...................ITTWLLVASLAKILFNLMKPLSKWLPDSSLLIIVGLGLGYFLNQTTLSGVHLDSHAFFLYLLPPIIFDAGYFMNFDSVLVFSVLGTLWNTFAIGGSLLIMSKYQLFTMPFTTFEILVFSALISAVDPVAVIAIFEEIHVNEFLFINVFGEALFNDGVTVVLYQMFKSFALIGSENLSFVVALGGAA--IGIIFAIATSLATKYTQGIKILAPVFIFLLPYMAYLTAEMVSLSS---------------IIAIAVCGMLMKQYIKGNITEAATNSVKYFTKMLAQCSLGLSTLTSEHHVDFIFIGATLVFCLIYRAIGIIVQCFIL..... 357
10 -7.230[T] KOG2290 Rhomboid family proteins  ali follow..  11  603................TKGRCEITSREYCDFMRGYFHEEATLCSQVHCMDDVCGLLPFLNPEVPDQ-------RLWLSLFLHAGILHCLVSICFQMTVLRDLEKLA--WHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQS-ARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHIS------GFISGLFL---SFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYVYPVRCEWCEFLTCIPF................................................................................... 840

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.