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Query: [R] COG2985 Predicted permease, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDIALTVSVLALVAVVGLWIGNIKVRGVGFGIGGVLFGGIIVGHFVDQAGVTLSGDMLHFIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIMGGLVTAILHKIFAIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPVDLVDQMGMSYAMAYPFGICGILLTMWLMRLIFRVNVEAEAQKHESSLANGHSLIQTMNIRVENPNLNNMAIQDVPILNSDKIICSRLKRDDTLMVPSPGTIIQAGDLLHLVGQSTDLHNAQLVIGKEVDTSLSTRGTDLRVERVVVTNEKVLGKRIRDLHFKERYDVVISRLNRAGVELVASSDASLQFGDILNLVGRPASIDAVANVVGNAQQKLQQVQMLPVFIGIGLGVLLGSIPLFVPGFPVALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLTQGEGLSWIGYGIFITAIPLITVGLLARIFAKMNYLTLCGMLAGSMTDPPALAFANNLHATSGAAALSYATVYPLVMFLRIITPQLLAVIFWGMGLast
1 -154.000[R] COG2985 Predicted permease  ali  100  1MSDIALTVSVLALVAVVGLWIGNIKVRGVGFGIGGVLFGGIIVGHFVDQAGVTLSGDMLHFIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIMGGLVTAILHKIFAIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPVDLVDQMGMSYAMAYPFGICGILLTMWLMRLIFRVNVEAEAQKHESSLANGHSLIQTMNIRVENPNLNNMAIQDVPILNSDKIICSRLKRDDTLMVPSPGTIIQAGDLLHLVGQSTDLHNAQLVIGKEVDTSLSTRGTDLRVERVVVTNEKVLGKRIRDLHFKERYDVVISRLNRAGVELVASSDASLQFGDILNLVGRPASIDAVANVVGNAQQKLQQVQMLPVFIGIGLGVLLGSIPLFVPGFPVALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLTQGEGLSWIGYGIFITAIPLITVGLLARIFAKMNYLTLCGMLAGSMTDPPALAFANNLHATSGAAALSYATVYPLVMFLRIITPQLLAVIFWGMG 553
2 -26.600[S] COG3273 Uncharacterized conserved protein  ali follow..  13  122............................................................................................................................................................................................................IVRATVAAESVMAGRTLGDLELDIETGMWVIAIRRSEDIYDPDKETRIRQGDVLIARGHDEGVPLFFEMATTRKFIPRERNSEEVITRLQVEKCSPIVGKTFSELKLETETGLHVMAIKRAERWVAPKGNTVVQAGDMLIARGSRIGEGALIEMCECKLRQ............................................................................................................................................................................................ 399
3 -20.200[P] COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels  ali follow..  11  11........................................................................................................................................................................................................................IGQKVEMITRNRDKISIIIHHDGRRELYYFDENDHEECVASVQFDDAEARQMSAIMAYKPKALEQVESALDDLIIEWCAEAGAPAIHQTIGDLNVGQEYHVTVIAIVKKNQDKQPSSETVIDEGDTLVISGEGTGLKRLIREK.................................................................................................................................................................................................. 159
4 -10.500[P] KOG3826 Na+/H+ antiporter  ali follow..  10  65....VRSIFVIFILLVAGIFAAKI-SKALRLPLFGCLALGIIIKNIT-DQFFVFPPFVETMIRKVALVMIIVRWGLATDIHFLYENALMPVTIGLVTAIGEIIAVTIASYFILNISFVMSIFCALILVTVSPAVTV------------------------------------------------------------------------------------------------AMINFKEKQLGSLKRIPENILADNLFCVI---------------------------FMVLSSIIFTDAPIATTILLNAGSIVFGCIGGIV------------------------------------LGWILWRFPRSDAPHTQFARITLLGTICIAVVIGTYLIKYSCSGFLAALITSAMSAWKADNKEKLECVESTYKYIWDSFALPLLFICLGMKFDCSTLTWEIVFLCIAVIAIGLLVRTILVMLVTLSSHINFKEQIVVALSLLPRATFQADLAPTLLLMATPFPDMAKDAALILKAAILSVLITAPIFDILLNLVG 463
5 -9.470[S] COG3400 Uncharacterized protein conserved in bacteria  ali follow..  11  56............................................................................................................................................................................................DATSSFRLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMCVVLSVKRDGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQK---EYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYL------------------------------QVKSNVGQFPAPFGKS-----IYLYIDMRLQNRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETESIEVMGLIVVGRELFLSKKHRKALYKTATPVY---KTNTSGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQM................ 383
6 -8.510[P] COG0569 K+ transport systems, NAD-binding component  ali follow..  13  1.......................MKIIILGAGQVGTTLAENLVSEDNDITLVDNESPQLQTLQE------HDLRVVQGSPSSPKVLRDAGAADADLMVAVT----------------EINMVACQMGYTLFNTPTRIARIRNSEYLREKDKLFNNENIPIDH---------LISPENLVTDEITRLIAYPGALQVAHFANNRISIVVVKAYYGGALVGYALSAFREHMHIDCRIMSILRNGKPIRPQGSTIVEAGDEITFICATEHIKAIMGELQRLEKP----------YKRVMIVGGGNVAFGVAKR-LENSCTVKLI-----ERDSNRAQALAEKLPKTLVFNGDASDQNLLFEE-------------------------------HIESVDVFLSLSSD---IMSALLAKRLGAKKAMVLIQRIAYINLIQGGTIDIAVSPQQVTISA..................................................................................................... 357
7 -7.460[P] COG4651 Kef-type K+ transport system, predicted NAD-binding component  ali follow..  15  5TPLITTIVGGLVLAFILGMLANKLRISPL----VGYLLAGVLAGPFT--PGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAI---PGAIAQIAVATLLGMALSAVLGWS--LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAV....................................................................................................................................................................................................................................................................................................................................................................................... 171
8 -7.270[P] COG0475 Kef-type K+ transport systems, membrane components  ali follow..  12  4.HILINVIILLGTAVFIVAILKRFRLSPV----LGYLIAGAAIGDHGLKI---VTYDQTKLLGELGVVFLLFAIGLELSFERLKAMRRYVF---GLGSLQVLTTAIVIAGAMVLIDGN--SSAAIITGGGLALSSTALVMQVIDENRSQSTQIGRISLAILLLQDLAVVPLLVIVPLL....................................................................................................................................................................................................................................................................................................................................................................................... 168
9 -7.100[P] KOG4505 Na+/H+ antiporter  ali follow..  11  16.......AIIGGFTSLFMLCSLIIK-EKLFLGEATMTATGLIFGPYVAKLSWGNTDYITEELARVLLVVEVFAAGAEL----RAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLSFLESLAIAAC-------------------------------------------------------------------------------------------------------------------------ITATDPVLASS--------------------------------------IVGKGKFARRVPGHLRNMLLA------------ESGCNDGMAIPFLYLAIYLIIEKPARHAGRDWVCIIILYECTFGCVLGAIIGYFVLALFCGGIGTIIGVDDVSFCAGAAFSWDSWFSKKTEE--SHVSNVIDLLLNLSFFVYVGAIMPWPQFHMPHMDLSVWRLVVLAICILIARRIPAVLLFK-INWREALFAGGPIGVGALYTCLVARAELEVHSTVPEPNDAIENPEIPNWYVMWPVVCFLVLSSI. 424
10 -6.540[K] KOG2239 Transcription factor containing NAC and TS-N domains  ali follow..  6  158.........................................................................................................................................................................................PKETQPDEQGQLGTVAVRTREVSKQSRGERKARRILMKLDLKPMENVARVTMKKGKNILLYIDQPDVYRSSTYIFFGEIC-VEDTSTTSVASQAAVKAAERFRGTSPAGRQGNEDGKAPGEESPHDDD----------DDENDGEDADAMGLHAKDIELVQSRKKAIQALLKNDNDVVNAIMALTV...................................................................................................................................................................................... 340
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.