Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [M] COG3056 Uncharacterized lipoprotein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst MMNLHALPTSPRRWQCYDGGNFYQTRLRVSESPNMFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMSQDTSIHEFIKQNARLast
1 -108.000[M] COG3056 Uncharacterized lipoprotein  ali  100  1MMNLHALPTSPRRWQCYDGGNFYQTRLRVSESPNMFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMSQDTSIHEFIKQNAR 226
2 -25.500[R] COG3218 ABC-type uncharacterized transport system, auxiliary component  ali follow..  12  1................................MRLSRALFLAPLFAALMAGCAGAPNNDTFDLSVSSAAVTQGPSLKSRQLLIADPTDSENIVVRLSGSEVQYLGWSDRLPRMVQSKLVEAFEDTG-GQGLAIDYQVVSDIRAFEIDTARN----VANIEISVKLLNDRNGTVKAQEVFRASARVS---GSGNANFVKALDQAFAAATREIVA---TLKSL..... 201
3 -20.200[M] COG1462 Uncharacterized protein involved in formation of curli polymers  ali follow..  10  1............................MSHSAKKALLPLLAVATLAGLAGCATETSTALPVQQVESVNRPYSGVRSPIAVGKFDNRSSYMRGIFSDG--------VDRLGGQAKTILITHLQQTNFNVLDGADYVVTGDVTEFGRKEVGDRQSQIAYAKVALNIVNISTSEVVYSTQGAGEYALSNTASYDSTLNGKVLDLAMREAVNKLVNA............ 217
4 -18.100[S] COG4380 Uncharacterized protein conserved in bacteria  ali follow..  9  1...................................MKPLILGLAAVLALSACQVQ------KAPDFDYTSFKESKPASILVVPPLNESP-----------------DVNGTWGVLASTAAPLSEAGYYVFPGNDAVLYITVTEY--GTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSNSGLLGALVSAVVNQIANSLTDRGYQ............ 185
5 -17.800[S] COG5468 Predicted secreted (periplasmic) protein  ali follow..  17  2.....................................GFVAGALSLAALGGCQVRP---------DGPTGSTSIALAAIEISEADDR----------------------VEQEVRNALVFLTSRGQ-GEPVNPQYHLALSVSHRTMGVDDDAGAGRIVVKADYNLTKTATGETVKAGNRTAVALVDFPQQAKIRAVRDGENRAAKELAEIIGA--DLAAALGR... 168
6 -16.500[S] COG3009 Uncharacterized protein conserved in bacteria  ali follow..  10  1.........................................MTIAALWLAGCSSGEINKNLPVVQSGTQSTASQGNRLLWVAVPDYLAGNGVVYQTSDVKYVIALWASPLDQQLRNTLVANLSTQ----LGSAQDTLNVTVTEFNGRYDG-------KVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLAGVWSQEAASIAQEIKRLP........... 182
7 -14.500[M] COG2980 Rare lipoprotein B  ali follow..  8  1................................MRYL-ATLLLSLAVLITAGCG-------------RDTTQVPSTMKVMILDSGDPNGP------------------------LSRAVRNQLRLNGVELTRKDVPSLRLSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSNPQMALAKDNEQDMIVKEMYDRAAEQLIR............. 157
8 -13.800[S] COG4808 Uncharacterized protein conserved in bacteria  ali follow..  12  3...........................FYMKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTE-------IAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTENVTIDMEKVDFK............................................................................... 120
9 -13.700[R] COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family)  ali follow..  8  1..................................MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAVSAITRDGRPIVFVERIKNKTSEHIDTESITDTISTKMLNNFQNNDELVNQSAQYMLYGNLSSIVKNAGS---DKDVYYKMTMRLMDLQTGLIEWADETEIRKQQS........................................ 190
10 -12.100[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  16  1...................................MRKFGLVSLALLLLVGCRSHPEIPVNDEQSLVMESSLLAAGISAEKPVLSTSDIQPSASST-------LYNERQEPVTVHYRFY--YDARGLEMHPLERPR-SVTIPAHSAVTLYGSANFLGAHKVRLYLYL........................................................... 125
11 -12.100[S] COG3126 Uncharacterized protein conserved in bacteria  ali follow..  13  1...........................MKPWQPKALWQIVGGAALAVSLTGCAHQSAEATVHGTVNIRERVALPPDAVVTVTLSDISLADAPSRVIAQKAVRTEGKQAPFT---------SLPFNPSDIQPNARVIVSAAITR................................................................................... 126
12 -11.900[N] COG5567 Predicted small periplasmic lipoprotein  ali follow..  18  1................................MKNVFKTLAVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKKVDSQTQSTMPDKNDRATG....................................................................................................................................... 59
13 -11.000[R] COG5645 Predicted periplasmic lipoprotein  ali follow..  14  1MMMLFSARDR------YNSSGQHPRSTDEFIMIRNVLLAFMICSGMALLGGCSS............................................................................................................................................................................ 48
14 -11.000[N] COG5461 Type IV pili component  ali follow..  10  1.MNGEADMSQSA----LNTRTIATTMRAGRSRTGLPVLPVLAVAMTALLVGCAQRDSI-PIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTANEVAATAAGRDFARLAVASGVKRN---------RIVVVSYQAGSSETSAPVRVSYIAVRAQTDKCGRWPEDLLETSENKH----------YADFGCSYQNNLAAQMANPA--DLLGPRK. 218
15 -10.800[R] COG3042 Putative hemolysin  ali follow..  30  1...................................MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASV........................................................................................................................................................ 39
16 -10.300[S] COG4939 Major membrane immunogen, membrane-anchored lipoprotein  ali follow..  8  1................................MKLKKVITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTMSIEVKDGK-SDSLVKGQSASSVEVVSGATHSSDAFINYANQLIQAAQKADTTTISINNLAKMEDGTYKLEEQNYAHGYRVVFSMDVK-KEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAAQLQNAAQNGNTDTIKVYNLVE 297
17 -10.100[M] COG3317 Uncharacterized lipoprotein  ali follow..  9  1...........................MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDESYLDAAPLAELHAPAGMILPITTGDYARTQFSGDTATLLVENGRSSTLWPQVVSVIQAKNYPIEKRDDASQTLTTD-----VNWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLVNLEQAGKPVADAASLQRYSTEMMNVISAGLDKTATDAANAAQNRS 224
18 -9.550[M] COG3133 Outer membrane lipoprotein  ali follow..  13  1..................................MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTINVRPVQIQGGD----------------DSNVIGAIGGAVLGGF--LGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIM.................................................. 125
19 -9.440[S] COG4925 Uncharacterized conserved protein  ali follow..  9  8..............................NGIKWMLICLGVFLLAILATGCIEQNNIDQRAISNQSEMNSSEKTVSTEP-EHGLALSEMSVKITSQGHIATFQLYDTVAAKELYEQLPLELDLTDAQWMFYPPKKLNATAQEAYHDGKKGELSYYDPWGDVFMLYEDFYAGDEMHRL-IDEIVNMSGSMQIEKNELSQEEGETKMRISIQANGETTIYELNDGK. 209
20 -9.380[S] COG4259 Uncharacterized protein conserved in bacteria  ali follow..  19  1................................MMNPKSRLSLCAAVLALTACGGNGQK........................................................................................................................................................................ 28
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.