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Query: [S] COG3111 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNPLast
1 -54.600[S] COG3111 Uncharacterized conserved protein  ali  100  1MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP 130
2 -17.600[L] COG5235 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  11  22..........................ESRPGSGESETNTRVNTLTPVTIKQILESKQDHHVCFVGVVRNITDHTALTIEDGTGQIEVGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDS 159
3 -16.900[L] KOG3108 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  13  14......................SSHDISQERKNQSFQSLGDKLPLPVTLASLSTKLEDRTIHTVGVILEKSYEDGYTLHDPEDTAKINDGGSKFVSPGLEEDTRVRLMGKLKNVAGNKMILIYYLQKLA. 145
4 -14.100[R] COG4085 Predicted RNA-binding protein, contains TRAM domain  ali follow..  16  167.........................................PPAEQQVTINEARGRLNEEVTIKGIITADQNKLSTFLQDETGGINIYSPSPE-QFPELKEGMDVTVTGKITSYQGLKEIVPNSSGIK.. 257
5 -13.300[J] KOG0556 Aspartyl-tRNA synthetase  ali follow..  17  89..........................................GRTYTQISDISAKNDGQTVLLRARVYTSRLQGNFSLRQKYDTIQALAVVNK---GSISLESIVLVEGIVKKTVQDAEIHISSIYVISP 196
6 -12.800[S] COG3390 Uncharacterized protein conserved in archaea  ali follow..  13  45..........................................................NRIFIVGTLIEKEDIGTGRVSDPTGSFLVYAPEAAQFLEECELPAFVAVIGKTSTYTTDTSIRPESIQQVDE 131
7 -12.700[J] KOG0554 Asparaginyl-tRNA synthetase (mitochondrial)  ali follow..  17  95...........................................AEVKGGADEGLSRVGQSLNIMGWVLRSQSSVTFIINDGSCLSNLQCGYDQVESGSILTGASVSVQGTIQGTKQKVELKVEKIIVVG. 193
8 -12.400[J] COG0173 Aspartyl-tRNA synthetase  ali follow..  22  5...............................................YCGLISEQYLDQTVTVKGWVHRRRDHGGVIFRDREGIVQVVIDPDTPEADSSRNEYVLSITGRVKMISGKIEILAKEIEVLNA 104
9 -11.700[J] KOG0555 Asparaginyl-tRNA synthetase  ali follow..  15  106.........................................PEAKVIKIGESVQ-HRDQRVSIKAWVHRLRRQGKLVLRDGYGFLQCVLNDKLCQSVTLSTETSVQVYGIIKSAPDGHELTVDYWEVIGK 206
10 -11.700[J] COG0017 Aspartyl/asparaginyl-tRNA synthetases  ali follow..  15  3..............................................TTIKQAKDH-LNQDVTIGAWLKRSSGKIAFLLRDGTGFMQGVVVKSEVDEKEIAQESSLYVTGTINRSDLGYEMQVKSIEVISE 97
11 -11.500[S] COG3495 Uncharacterized protein conserved in bacteria  ali follow..  11  1MRRFPFARLLLLALLSSPLVHAELEAAGTFTSKGGLKQSDRKMPAVMYSAKTVASLDGKAIRLGGYPVAKGRVTEFFLVPYPGAVLVRYPQGL---KLTDIYTPLWVSGTLKIEQVSNDIDKARVKVVE. 178
12 -11.400[L] KOG3818 DNA polymerase epsilon, subunit B  ali follow..  13  212............................................QLTPIRNLLGRAGNTFLLF-GLLTIA-PDGTLWLEDLDSQVQLDVSQAEQGFGLFCPGCLVLVNGQFLSSG---LFLVFEL..... 287
13 -10.600[M] COG3065 Starvation-inducible outer membrane lipoprotein  ali follow..  11  9NHKWMYGWLGLGALLLSGCV---------TIPPAIQGTTATPLQDLNLIRSAPKLFIGQEARFGGTVVNVKNEPNRTREPSQGRVIAYVDG--FLEPVDFRGHLVTVVGPIMTPYNFVVIKATGYKR... 150
14 -9.970[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  12  1MRKGCFGLVSLALLLLVGCRSHPEIPVNDEQSLVMESSLLAAG---ISAEKPVLSTSDIQPSASSTLYNERQEPRFYWYDARGLEM---PLERPRSVTIPAHSAVTLYG..................... 109
15 -9.770[O] COG2332 Cytochrome c-type biogenesis protein CcmE  ali follow..  16  9LWIACAVLAGLALTIGLVLYALRSNID-----------YTPGEILYGKRETQQMPEVGQRLRVGGMVMPGS---TFTIYDAEGSVDVSYEG----PDLFREGQGVVVQGELEKGN---HILAKEVLA... 128
16 -9.690[L] COG1599 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins  ali follow..  9  42.................AQRSVTNYFLKKYSIPKNEFYVRQAEPQLTKIVDIT--ENGQWANLKAKVIQLWENTVGLLGDETGIIKFTIWKNA---PPLEQGESYLLRSVVGEYNERFQIQFNKNSSVEK 158
17 -9.540[R] COG3481 Predicted HD-superfamily hydrolase  ali follow..  19  3.................................................KGIMLHEVGEQVIKSSTKGIASNGKPFLLQDQSGDIEAKLDAKQSDEVTYAPQTIVKVVGDVHHYRGRTQLKLRNIRPVSE 92
18 -9.190[J] COG1190 Lysyl-tRNA synthetase (class II)  ali follow..  14  51...........................................AEFDSKENEELEALNIDVTVAGRMMTRRIMGKASFQDVGGRIQLYVSRDDLPEGVWDLGDILGARGKLKTKTGELSIHCSELRLLTK 148
19 -9.060[S] COG3689 Predicted membrane protein  ali follow..  8  165.............................................MEAIYDYPDEFEGKTIQFTGFVYNDPSHANSQFADSG-GLLTKGNTR-----QYENNTWITAKGKLVNHYHKELLEIDSFTKVDK 261
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.