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Query: [M] COG3133 Outer membrane lipoprotein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPRLast
1 -73.600[M] COG3133 Outer membrane lipoprotein  ali  100  1MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR 155
2 -33.600[S] COG3134 Predicted outer membrane lipoprotein  ali follow..  24  1MNKSMLAGIGIGVAAALGVAA--------VASLNVFERGPQYAQVVSATPIRRPVQDEHRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQESDGYDVTYKIGDQQGKIRMDR------DPGTQIPL-----DSNGQL. 173
3 -9.750[R] COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family)  ali follow..  14  1MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAVFVERIKNKTSEHIDTESITDTISTKMDELVNQSTAIQFGKMVGALYGNLSSIVKNAGSDKDVYYKMTMRLMDLQTGLIEWADETEIRKQQSKSLL............ 194
4 -9.630[M] COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis  ali follow..  9  6.FRLIRLLPLASLVLTACTLPGHKGPGKSPDSPQWRQHQQEVRHLNQYQAFAYISDDQKVYARLLLTNPLGSTELELNAQPGNVQLVDNKGQR---YTADDAEEMIGKLTGMPIPLN-GKNWKVVYGGYDSKTQPAMPANMELSDGSQRIKLK.. 200
5 -9.530[M] COG3056 Uncharacterized lipoprotein  ali follow..  13  35MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTV-SINGADQRTDQSRDLRFLLQEVLEKQMRGYMVGPNGPVNLQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMT.............................. 176
6 -9.090[S] COG4803 Predicted membrane protein  ali follow..  20  86.................................................KVKLNQLMNLTAAGAASGSFWGLLVGVLFLNP---LIGVALGAASGAIGGALSDVGINDNFMKELARGLQPGNAALFVLVKEMTEDKVLKDIS............. 175
7 -9.010[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  12  1MRKCFGLVSLALLLLVGCRSHPEIPVNDEQSLVMESSLLAAGISAEKPVLST-----------------------------------------SDIQPSASSTLYNERQEPVTVHYRFARGLEMHPLERPRSVTIPAHSAVTLYGSANFLGAH.. 117
8 -8.390[N] COG5567 Predicted small periplasmic lipoprotein  ali follow..  21  1MKNKTLAVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKKVDSQTQSTMPDKNDRATGDGPS.............................................................................................. 63
9 -8.170[NU] COG3168 Tfp pilus assembly protein PilP  ali follow..  15  1MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYELSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKI---DVIEIVPDGEGNWLERPRSLTLKERS................................. 174
10 -8.080[M] COG4520 Surface antigen  ali follow..  11  3...............................................................SACTTTGTRPAGGSLFGRSAQPSTPFLANLQGGIVGKSGVE-----------LDRGDQTKALEAEYKALETAPVGTPVIWTGDDVKGQVVA. 82
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.