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Query: [NT] COG3143 Chemotaxis protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMQPSIKPADEGSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPIELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQSARPKRENESLLNGPQVDTSKAGVVASQDQVDDLLDSLGFLast
1 -71.900[NT] COG3143 Chemotaxis protein  ali  100  1MMQPSIKPADEGSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPIELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQSARPKRENESLLNGPQVDTSKAGVVASQDQVDDLLDSLGF 214
2 -9.490[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  9  750..........QSQLTEKDSMIENMKSSQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAI--KEQLDSSNSTEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDLDHI...... 962
3 -8.280[NT] COG0840 Methyl-accepting chemotaxis protein  ali follow..  13  377..................DFTGAIADSINYSIDQLRLVETINQTAVQVAAAAQETQSTAMHLAEASEHQAQEIAGASAAINEMAVSIDQVSANASESSAV---AERSVAIANKGNEVVHNTITGMDNIREQIQDTSKRIKRLGESSQEIGDIVSLINDIADQTNILALNAAIQASMAGDAGRGFAVVADEVQRLAERSSAATKQIEALVKTI.. 568
4 -7.910[R] COG1579 Zn-ribbon protein, possibly nucleic acid-binding  ali follow..  10  1..................................................MHDALLSILAI-QELDIKMIRLMRVKKEHQKELAKVQSLKSDIRRKVQEKELEMENLKTQIRDGENRIQEISEQINKLENQQAAVKKMDEFNALTQE-MTTANKERRSLEHQLSDLMDKQAGGEDLIVSLKESLASTENSSSVIEKEIFESIKKINEEGKAL.. 160
5 -7.870[D] COG5185 Protein involved in chromosome segregation, interacts with SMC proteins  ali follow..  8  271..........YNQTEALKSTNEELINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQLDRNLNMIGSKISELRKEVFDTDLLQASIDSLEKKVQKFNSLAYRI................................................ 427
6 -7.710[L] COG3923 Primosomal replication protein N``  ali follow..  13  4...............GMMESYSKFHTILNELKHSAAQFDRQRGEHEEAHSTLQALIREKESGRLTALRAEYLSERLLAQIAALTRELSTQNVRRNEPKPHAYFKKPINELYQELAQHQDWERRLMDLVRDKALLLEQASATEKQSEQRLNRCREAKIKIEKRIT.................................................. 181
7 -7.660[R] KOG0511 Ankyrin repeat protein  ali follow..  9  307.......................FTNNFKEKVTYIKAKHVTGKYNSIIPQLT--LRYLTDIPWMYAVDVLLLADIL------LEDRLKTIASTIITQSKEFIQQYNVFDVLYLSWEIVERLEQFAAKIAIHLQELYKDPEIKRAIMLSSQRIIELVDDIRYYLLRKYSFEPDDVELFENQDDLEYLKQVGYLEYRKDMGM----LDNILADLEL 511
8 -7.580[U] KOG3838 Mannose lectin ERGIC-53, involved in glycoprotein traffic  ali follow..  13  317...................................RELRQIWQGQSQIADHLRELSRKVDEIIGRQETTLSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHA--VQTLIAEMRDGMNQVKQGITHVGQRLAAPQGAAQ.................................... 468
9 -7.490[U] KOG2180 Late Golgi protein sorting complex, subunit Vps53  ali follow..  9  1..MSESAVAVEPEERMVANNKIHFSKEVKQVIDKVLKTDDPMDAPD---NTVDYINQLFP-NEQSLAGIDETIQKMQCEVSLIDDNIRSVRGQTNTGQDGQLALCEAQKVISSLFSHIIDVKTRAERTEEMVKEITRDIKQLDCAKRNLTAAITTLNHLHESLNKLIERRSYGEILNPLQAITEVNQHFQQFSDIEEIKNLSQSVDKIQVTL.. 214
10 -7.370[S] KOG3270 Uncharacterized conserved protein  ali follow..  11  239........................VSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSLEAKRQTVLDKYELLTQMKSTFEKKMQRQHELSELQARLKVAAHEAEEESDNIAEDFLE-MEIDDFLS---MEKRTICHCRRAKEEKLQQAIA.............................................. 388
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;